View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-11 (Length: 542)
Name: NF4464-Insertion-11
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-11 |
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Alignment Details
Target: chr5 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 541
Target Start/End: Original strand, 14415645 - 14416174
Alignment:
| Q |
8 |
aagaaaagggtcacaagtatgatccttgacactttcatttttaatnnnnnnnnnnttgaatgtttcaaatgaaacggggtgttcaagtttccaccgagtt |
107 |
Q |
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| T |
14415645 |
aagaaaagggtcacaagtatgatccttgacactttcatttt-aataaaaaaaaa-ttgaatgtttcaaatgaaatggggtgttcaagtttccaccgagtt |
14415742 |
T |
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| Q |
108 |
ggagcaaaggtgctacaaccttttataagaaaatgtttggacttataccattgaatagtatgtttgattgaggtagccatatatagcaaggtctaaaata |
207 |
Q |
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||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14415743 |
ggaacaaaggtgctacaaccttttataacaaaatgtttgcacttataccattgaatagtatgtttgattgaggtagccatatatagcaagctctaaaata |
14415842 |
T |
|
| Q |
208 |
agttaaattgggtttgaatgatggaaactagttttgacttttgagggtggatatatggaatgttacacatgttgtctatttatagtgagtctttattttt |
307 |
Q |
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| T |
14415843 |
agttaaattgggtttgaatgatgcaaactagttttgacttttgagggtgcatatatgcaatgttacacatgttgtctatttatagtgagtctttattttt |
14415942 |
T |
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| Q |
308 |
attggttggtttctaatccgttgaggtagccatatttaacgaatgagtcttaacccatgttttttataaacnnnnnnnnctcctatttaagctatatttg |
407 |
Q |
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|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14415943 |
attggttgctttcgaatccgttgaggtagccatatttaacgaatgagtcttaacccatgttttttataaacttttttttctcctatttaagctatatttg |
14416042 |
T |
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| Q |
408 |
aataaaacatattgtttnnnnnnnnnntgcagagtttctcgatcattttcattttgttgtgtattcagatcatttgcctgtctcctaactatataaactt |
507 |
Q |
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| T |
14416043 |
aataaaacatattgtttaaaaaaaaaatgcagagtttctcgatcattttcattttgttgtgtattcagatcatttgcctgtctcttaac--tataaactt |
14416140 |
T |
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| Q |
508 |
gggaggagtcgtttattaatattgtctcaatcac |
541 |
Q |
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| T |
14416141 |
gagaggagtcgtttattaatattgtctcaatcac |
14416174 |
T |
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