View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464-Insertion-12 (Length: 484)
Name: NF4464-Insertion-12
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 37141491 - 37141016
Alignment:
| Q |
8 |
ctatcatatggtgcttgagtttgttaggaatctgttctattattaggaaaaattgagaagnnnnnnntatcatatcaagaagtatttacttcgccattgc |
107 |
Q |
| |
|
||||||||| || || ||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||| |||| |
|
|
| T |
37141491 |
ctatcatataatgtttaagtttgttaagaatctgttctattattaggaaaaattgggaagaaaaa--tatcatatcaagaagttgttacttctt--ttgc |
37141396 |
T |
|
| Q |
108 |
a---aaaaattatcactgttttgcttccaaaagtggtgaatatgagtagctatgacaatggaatttgaccacgtagatatccgtctgaacccgccaattt |
204 |
Q |
| |
|
||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
37141395 |
tttgaaaaattatcactcttttgcttcgaaaagtggcgaatatgagtagctatgacaatggaattcgaccacgtagatatccgtttgaacccgccaattt |
37141296 |
T |
|
| Q |
205 |
tgacagggaaaa-acattccaatgcacaaatttggatacaacgtagaatcataatagctagtattacctttatcccagcaaacgtctttctagcttcaaa |
303 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| || | |
|
|
| T |
37141295 |
tgacagggaaaacacattccattgcacaaatttggattcaacgtagaatcagaatagcttgtattacctttatcccagcaaacatctttctagcatcgca |
37141196 |
T |
|
| Q |
304 |
attattcttattttaaatcctggtgtgaactatgtcggtccttaatcgaataaaaccgacgttagtctaaatggaacaaaagggtttgggatgacatgac |
403 |
Q |
| |
|
||||||| ||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37141195 |
attattcctattttaaatcctagtctgaacaatgtcggtccttaatcgaattaaaccgacgttagtctagatggaacaaaagggtttgggatgacatgac |
37141096 |
T |
|
| Q |
404 |
aacaaattgttctattattgtccataaaagcaattttttcactttcagcttcacctcttgctctaactacctttcctaca |
483 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37141095 |
aacaaattgttgtattattgtccataaaagcaattttttcactttcagcttcacctcttgctctaactaccattcctaca |
37141016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University