View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-13 (Length: 472)
Name: NF4464-Insertion-13
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-13 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 72 - 472
Target Start/End: Original strand, 28231363 - 28231761
Alignment:
| Q |
72 |
gggaaattttgaaacttttggtaatatttatagagccctatatatatctcatagctgtgcctataaattttaaacgtaacaatataatatagaagggacc |
171 |
Q |
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| T |
28231363 |
gggaaattttgaaacttttgctaatatttatagagccctata--tatctcatagctgtgcctataaattttaaacgtaacaatataatatagaagggacc |
28231460 |
T |
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| Q |
172 |
acatatttagttataccaaactttattatcaactaatagaaaagcaatttatgtatcaaagttcttcataaatggcatattttagaatttacgtccaagt |
271 |
Q |
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| T |
28231461 |
acatatttagttataccaaactttattatcaactaatagaaaagcaatttatgtatcaaaattcttcataaatggcatattttagaatttacgtccaagt |
28231560 |
T |
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| Q |
272 |
cttcaagtgttaaccgtcaattttccatttctaatgtatttcttttcagctttgattttcttttctacttgggtatcttaccaatttaccatttcataaa |
371 |
Q |
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| T |
28231561 |
cttcaagtgttaaccgtcaattttccatttctaatgtatttcttttcagctttgattttcttttctacttgggtatcttaccaatttaccatttcataaa |
28231660 |
T |
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| Q |
372 |
gaccgtagatttttgttaatttactttcaaaacgaaaccctactttgagtaaaaaacatttgtatcgaatgacattcattgtatagcgtttaatcatacc |
471 |
Q |
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| T |
28231661 |
gaccgtagatttttgttaatttactttcaaaacgaaactctactttgagtaaaaaacatttgtattgaatgacattcattgtatagcgtttaatcatacc |
28231760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 28231272 - 28231320
Alignment:
| Q |
7 |
atatgcttcattacaatgataagagaatggaatttaagagtgatatata |
55 |
Q |
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| T |
28231272 |
atatgcttcattacaatgataagagaatggaatttaagagtaatatata |
28231320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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