View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-14 (Length: 445)
Name: NF4464-Insertion-14
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 7 - 445
Target Start/End: Original strand, 50653350 - 50653789
Alignment:
| Q |
7 |
agctgttggatcttatttaatccatcgtttgcttttgctttcatcactttcaccatgatttgtgctagccctgttacatcaccagcagaggtaccagaat |
106 |
Q |
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| T |
50653350 |
agctggtggatcttatttaatccatcgtttgcttttgctttcatcactttcaccatgatttgtgctagccctgttacatcaccagcagaggtaccagaat |
50653449 |
T |
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| Q |
107 |
atgctttcaaagactgaaaacaaacattgtaatttggtgnnnnnnngcaagtgttttctatgagtgatagtttttcatcctttgaagggaaattagtact |
206 |
Q |
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| T |
50653450 |
atgctttcaaagactgaaaacaaacattgtaatttggtgtttttttgcaagtgttttctatgagtgatagtttttcatcctttgaagggaaattagtact |
50653549 |
T |
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| Q |
207 |
tctgctttggattgttggtaatgaaattatgataacaatagcttgaaggaataagcaaagagttagaggcttaaaatttgtcattgttaatttgtagcta |
306 |
Q |
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| T |
50653550 |
tctgctttggattgttggtaatgaaattatgataacaatagcttgaaggaataagcaaagagttagaggcttaaaatttgtcattgttaatttgtagcta |
50653649 |
T |
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| Q |
307 |
gaaataatgtgctaggccattttata-gggtaggaaaaagttattagaggttgattgttgtctaaaaaatattaaagtacaacttttctt-nnnnnnntg |
404 |
Q |
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| T |
50653650 |
gaaataatgtgctaggccattttataggggtaggaaaaagttattagaggttgattgttgtct-aaaaatattaaagtacaacttttcttaaaaaaaatg |
50653748 |
T |
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| Q |
405 |
tacaattacatctcatcttttaggattcatatcccttatta |
445 |
Q |
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| T |
50653749 |
tagaattacatgtcatcttttaggattcatatcccttatta |
50653789 |
T |
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