View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-15 (Length: 398)
Name: NF4464-Insertion-15
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-15 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 119 - 259
Target Start/End: Original strand, 47563131 - 47563271
Alignment:
| Q |
119 |
aaaattactaaggaaacatactttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttcctcctttgtcatacgcttgt |
218 |
Q |
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| T |
47563131 |
aaaattactaaggaaacatactttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttcctcctttgtcatacgcttgt |
47563230 |
T |
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| Q |
219 |
tgcctccgtcgaagcagccaaagcacaaccccatgttttgt |
259 |
Q |
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| T |
47563231 |
tgcctccgtcgaagcaaccaaagcacaaccccatgttttgt |
47563271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 7 - 95
Target Start/End: Original strand, 47563024 - 47563110
Alignment:
| Q |
7 |
ataaagaaacaaacaatattataacatgcagcacnnnnnnngaagaacaagattataacatggtttttcatacatataaaaatctagaa |
95 |
Q |
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| T |
47563024 |
ataaagaaacaaacaatattataacatgcaacacaaaaaa--aagaataagattataacatggtttttcatatatataaaaatctagaa |
47563110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 351 - 398
Target Start/End: Original strand, 47563372 - 47563419
Alignment:
| Q |
351 |
gaacaagaaaaccgtatccttccctttttcgttggagtttttcttccc |
398 |
Q |
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| T |
47563372 |
gaacaagaaaactgtatccttccctttttcgttggagtttttcttccc |
47563419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 5156823 - 5156721
Alignment:
| Q |
141 |
ttttctgggcggcttcagcagctctagcgcgtgcttcttcagaggctaatctttcttcctcctttgtcatacgcttgttgcctccgtcgaagcagccaaa |
240 |
Q |
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||||||| |||||||||||||||||||| || ||||||||||||||||||| |||||| || || ||||| ||||||| || || ||||||| ||||| |
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| T |
5156823 |
ttttctgagcggcttcagcagctctagcacgcgcttcttcagaggctaatcgttcttcttctttggtcatgcgcttgtcaccaccaccgaagcaaccaaa |
5156724 |
T |
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| Q |
241 |
gca |
243 |
Q |
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||| |
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| T |
5156723 |
gca |
5156721 |
T |
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