View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-17 (Length: 375)
Name: NF4464-Insertion-17
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-17 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 10 - 375
Target Start/End: Original strand, 12519222 - 12519587
Alignment:
| Q |
10 |
gcaggcagcaccagatatctcggcatttatccgagcaaaggcagcagcttatcccatttttgagatgatagagagggatacagtgagcnnnnnnngctca |
109 |
Q |
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| T |
12519222 |
gcaggcagcaccagatatctcggcatttatccgagcaaaggcagcagcttatcccatttttgagatgatagagagggatacagtgagcaaaaaaagctca |
12519321 |
T |
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| Q |
110 |
aaaactggtcgaaaattaagcaaattggatggtcatatccagtttaaagatgtctgtttcagttatccgtctcgtccagatgtaggaatcttcaccaacc |
209 |
Q |
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| T |
12519322 |
aaaactggtcgaaaattaagcaaattggatggtcatatccagtttaacgatgtctgtttcagttatccgtctcgtccagatgtaggaatcttcaccaacc |
12519421 |
T |
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| Q |
210 |
taaatctggacattcctgcagggaaaattgtagcacttgtgggaggaagtggttccggaaaaagcactgttgtatcgttgatcgaacgtttttatgaacc |
309 |
Q |
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| T |
12519422 |
taaatctggacattcctgcagggaaaattgtagcacttgtgggaggaagtggttccggaaaaagcactgttgtatcgttgatcgaacgtttttatgaacc |
12519521 |
T |
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| Q |
310 |
aatttctggtcagatacttttagacaagaatgatatcagggaacttgatctcaaatggcttaggca |
375 |
Q |
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| T |
12519522 |
aatttctggtcagatacttttagacaagaatgatatcagggaacttgatctcaaatggcttaggca |
12519587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 372
Target Start/End: Original strand, 27722263 - 27722625
Alignment:
| Q |
10 |
gcaggcagcaccagatatctcggcatttatccgagcaaaggcagcagcttatcccatttttgagatgatagagagggatacagtgagcnnnnnnngctca |
109 |
Q |
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||||||||||||||| | ||||| |||||| |||||||| ||||||||||||||||||||||||||||||| || || | ||| ||| ||||| |
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| T |
27722263 |
gcaggcagcaccagacgtttcggcctttatcagagcaaagacagcagcttatcccatttttgagatgatagaaagagacatagttagcaaaaatagctca |
27722362 |
T |
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| Q |
110 |
aaaactggtcgaaaattaagcaaattggatggtcatatccagtttaaagatgtctgtttcagttatccgtctcgtccagatgtaggaatcttcaccaacc |
209 |
Q |
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|||| || ||||||||||| ||| | || ||||| || || |||| |||||||||||||||| || ||||| || ||||| | || |||| ||| |
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| T |
27722363 |
aaaaatgatcgaaaattaaaaaaaatagacggtcacatacaatttactaatgtctgtttcagttacccatctcgccctgatgttgttattttcaacaatt |
27722462 |
T |
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| Q |
210 |
taaatctggacattcctgcagggaaaattgtagcacttgtgggaggaagtggttccggaaaaagcactgttgtatcgttgatcgaacgtttttatgaacc |
309 |
Q |
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| T |
27722463 |
tctgtcttgagattccttcaggtaaagttgtggccattgttggagggagtggttcaggaaaaagcacgattatatcgttaatcgagcgtttctatgaacc |
27722562 |
T |
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| Q |
310 |
aatttctggtcagatacttttagacaagaatgatatcagggaacttgatctcaaatggcttag |
372 |
Q |
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||||||||| || || || ||||||| ||||||||| | |||||||||||| ||||||||||| |
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| T |
27722563 |
aatttctggccaaattctgttagacaggaatgatataaaggaacttgatctgaaatggcttag |
27722625 |
T |
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