View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-18 (Length: 306)
Name: NF4464-Insertion-18
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-18 |
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| [»] scaffold0050 (2 HSPs) |
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Alignment Details
Target: scaffold0050 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 68 - 306
Target Start/End: Complemental strand, 3216 - 2978
Alignment:
| Q |
68 |
accaactctttgaatatgatacatctaacaggtaaaagtttaaatataattaaacaaaacgccaagaagatggcatctctcatacctggagttctactga |
167 |
Q |
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| T |
3216 |
accaactctttgaatatgatccatctaacaggtaaaagtttaaatataattaaacaaaacgcgaagaagatggcatctctcatacctggagttctactga |
3117 |
T |
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| Q |
168 |
agcttctccaaacaatgaactctaatgtgaaagttcgcggtgaacaccgttcagttcttctgcaagtgataagcatcgttcctgcattatccggttctga |
267 |
Q |
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| T |
3116 |
agcttctccaaacaatgaactctaatgtgaaagttcgcggtgaacaccgttcagttcttcttcaagtgataagcatcgttcctgcattatccggttctga |
3017 |
T |
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| Q |
268 |
attatggcctaaccacggtttctttataaaagtctcgga |
306 |
Q |
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| T |
3016 |
attatggcctaaccacggtttctttataaaagtctcgga |
2978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 38
Target Start/End: Complemental strand, 3276 - 3246
Alignment:
| Q |
8 |
aaaagtaggccaccatataataaattaataa |
38 |
Q |
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| T |
3276 |
aaaagtaggccaccatataataaattaataa |
3246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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