View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464-Insertion-2 (Length: 955)

Name: NF4464-Insertion-2
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464-Insertion-2
NF4464-Insertion-2
[»] chr5 (26 HSPs)
chr5 (553-955)||(4835108-4835510)
chr5 (73-455)||(4834606-4834999)
chr5 (390-455)||(42909820-42909885)
chr5 (384-455)||(471915-471986)
chr5 (392-444)||(21575722-21575774)
chr5 (409-455)||(12718304-12718350)
chr5 (409-455)||(12779530-12779576)
chr5 (390-441)||(17625889-17625944)
chr5 (390-444)||(18449368-18449422)
chr5 (379-421)||(20719897-20719939)
chr5 (409-447)||(20719939-20719977)
chr5 (409-455)||(31284318-31284364)
chr5 (409-455)||(39595375-39595421)
chr5 (409-454)||(125194-125239)
chr5 (409-454)||(11306798-11306843)
chr5 (414-455)||(19376061-19376102)
chr5 (414-447)||(34767346-34767379)
chr5 (415-455)||(11666280-11666320)
chr5 (385-421)||(40566104-40566140)
chr5 (409-455)||(5130302-5130348)
chr5 (409-455)||(28811529-28811575)
chr5 (409-455)||(33567163-33567209)
chr5 (409-455)||(34381113-34381159)
chr5 (398-455)||(8087900-8087957)
chr5 (386-444)||(12910896-12910956)
chr5 (383-455)||(20040887-20040959)
[»] chr2 (26 HSPs)
chr2 (385-455)||(15141563-15141633)
chr2 (390-441)||(25270692-25270747)
chr2 (390-444)||(28014068-28014122)
chr2 (414-455)||(22390253-22390294)
chr2 (414-454)||(23344918-23344958)
chr2 (409-455)||(3091842-3091888)
chr2 (409-455)||(12600149-12600195)
chr2 (394-441)||(13333287-13333338)
chr2 (409-455)||(36133075-36133121)
chr2 (414-455)||(1889248-1889289)
chr2 (414-455)||(6639401-6639442)
chr2 (409-454)||(7086048-7086093)
chr2 (409-454)||(14714088-14714133)
chr2 (414-454)||(2013214-2013254)
chr2 (415-455)||(36376781-36376821)
chr2 (409-455)||(11164300-11164346)
chr2 (409-455)||(13104580-13104626)
chr2 (409-455)||(13711162-13711208)
chr2 (409-455)||(14140263-14140309)
chr2 (409-455)||(32750099-32750145)
chr2 (409-455)||(39454171-39454217)
chr2 (382-420)||(44189973-44190011)
chr2 (383-420)||(22390300-22390337)
chr2 (418-455)||(25801744-25801781)
chr2 (414-455)||(34442214-34442255)
chr2 (414-447)||(42251849-42251882)
[»] chr7 (17 HSPs)
chr7 (390-447)||(32171028-32171085)
chr7 (833-891)||(34126374-34126432)
chr7 (390-441)||(7701437-7701492)
chr7 (390-441)||(46022377-46022432)
chr7 (414-455)||(2790278-2790319)
chr7 (411-455)||(10656733-10656777)
chr7 (384-455)||(28861996-28862067)
chr7 (384-442)||(43657129-43657186)
chr7 (415-455)||(5378728-5378768)
chr7 (384-444)||(30982253-30982313)
chr7 (415-455)||(34348957-34348997)
chr7 (384-426)||(29355474-29355516)
chr7 (417-455)||(42204658-42204696)
chr7 (409-455)||(44894398-44894444)
chr7 (414-455)||(5978680-5978721)
chr7 (414-455)||(39875738-39875779)
chr7 (414-455)||(46651773-46651814)
[»] chr4 (29 HSPs)
chr4 (383-454)||(3624348-3624419)
chr4 (395-454)||(46912000-46912059)
chr4 (390-441)||(34616464-34616519)
chr4 (392-455)||(34974554-34974617)
chr4 (384-455)||(41119425-41119496)
chr4 (409-455)||(9162167-9162213)
chr4 (376-418)||(36512992-36513034)
chr4 (409-455)||(55927085-55927131)
chr4 (414-455)||(6953317-6953358)
chr4 (382-423)||(25476766-25476807)
chr4 (409-454)||(38844414-38844459)
chr4 (414-455)||(49194984-49195025)
chr4 (381-455)||(46794399-46794471)
chr4 (383-426)||(52851432-52851475)
chr4 (383-418)||(55927134-55927169)
chr4 (390-438)||(56364159-56364211)
chr4 (409-455)||(4896424-4896470)
chr4 (390-420)||(16004220-16004250)
chr4 (414-444)||(28480467-28480497)
chr4 (414-444)||(28481341-28481371)
chr4 (414-444)||(28482216-28482246)
chr4 (409-455)||(31275247-31275293)
chr4 (409-455)||(31658020-31658066)
chr4 (414-444)||(36792444-36792474)
chr4 (382-455)||(45779187-45779261)
chr4 (391-420)||(24772819-24772848)
chr4 (417-454)||(25523128-25523165)
chr4 (414-455)||(31240749-31240790)
chr4 (409-454)||(42915143-42915188)
[»] chr8 (16 HSPs)
chr8 (409-455)||(28927782-28927828)
chr8 (381-455)||(41344553-41344639)
chr8 (384-455)||(426202-426272)
chr8 (384-447)||(42996571-42996634)
chr8 (409-455)||(22767231-22767277)
chr8 (409-455)||(23258133-23258179)
chr8 (414-455)||(26871145-26871186)
chr8 (414-447)||(27836289-27836322)
chr8 (414-455)||(42012517-42012558)
chr8 (415-454)||(896009-896048)
chr8 (409-455)||(37524352-37524398)
chr8 (409-455)||(38128450-38128496)
chr8 (385-418)||(1370183-1370216)
chr8 (414-455)||(3989006-3989047)
chr8 (414-447)||(26507832-26507865)
chr8 (414-455)||(37101615-37101656)
[»] chr3 (23 HSPs)
chr3 (390-441)||(21217415-21217470)
chr3 (390-441)||(44383061-44383116)
chr3 (414-455)||(19418089-19418130)
chr3 (415-455)||(41112002-41112042)
chr3 (385-447)||(4209453-4209515)
chr3 (409-455)||(11173551-11173597)
chr3 (390-441)||(23592360-23592415)
chr3 (409-455)||(49130955-49131001)
chr3 (414-455)||(39604175-39604216)
chr3 (414-455)||(46473229-46473270)
chr3 (390-421)||(20162588-20162619)
chr3 (409-455)||(5188337-5188383)
chr3 (413-455)||(14207476-14207518)
chr3 (413-455)||(14215224-14215266)
chr3 (409-455)||(20380813-20380859)
chr3 (409-455)||(28269907-28269953)
chr3 (409-455)||(29706004-29706050)
chr3 (383-421)||(31997950-31997988)
chr3 (409-455)||(37215155-37215201)
chr3 (414-455)||(35272128-35272169)
chr3 (414-455)||(36799499-36799540)
chr3 (414-455)||(36869766-36869807)
chr3 (414-443)||(44365221-44365250)
[»] chr1 (21 HSPs)
chr1 (409-455)||(40610330-40610376)
chr1 (390-441)||(46907099-46907154)
chr1 (378-455)||(16836008-16836084)
chr1 (414-455)||(50659121-50659162)
chr1 (415-455)||(28253116-28253156)
chr1 (390-447)||(8849752-8849810)
chr1 (414-455)||(10384629-10384670)
chr1 (414-455)||(46948080-46948121)
chr1 (409-444)||(36418191-36418226)
chr1 (409-444)||(37690527-37690562)
chr1 (390-421)||(40610376-40610407)
chr1 (385-420)||(46948127-46948162)
chr1 (409-455)||(5477087-5477133)
chr1 (409-447)||(22389449-22389487)
chr1 (409-455)||(36690496-36690542)
chr1 (409-455)||(36706597-36706643)
chr1 (409-455)||(39010915-39010961)
chr1 (409-455)||(50141859-50141905)
chr1 (390-432)||(24981679-24981725)
chr1 (384-421)||(28716290-28716327)
chr1 (383-420)||(43755572-43755609)
[»] scaffold0011 (1 HSPs)
scaffold0011 (414-455)||(219593-219634)
[»] chr6 (11 HSPs)
chr6 (381-454)||(34021056-34021141)
chr6 (385-444)||(2163803-2163862)
chr6 (385-444)||(2175436-2175495)
chr6 (381-447)||(25554354-25554420)
chr6 (414-455)||(16336999-16337040)
chr6 (414-455)||(29383658-29383699)
chr6 (381-420)||(16336954-16336993)
chr6 (385-455)||(1434564-1434634)
chr6 (409-455)||(1897787-1897833)
chr6 (390-447)||(8395446-8395503)
chr6 (383-420)||(30906549-30906586)
[»] scaffold0286 (1 HSPs)
scaffold0286 (385-444)||(18547-18606)
[»] scaffold0501 (1 HSPs)
scaffold0501 (409-455)||(10440-10486)
[»] scaffold0076 (1 HSPs)
scaffold0076 (382-455)||(11293-11366)
[»] scaffold0332 (1 HSPs)
scaffold0332 (385-455)||(628-699)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 553 - 955
Target Start/End: Original strand, 4835108 - 4835510
Alignment:
Q  553 acactttaatcttgttgaaacctagtgtactagatgtgtgctagctaggtaattaaggaaagaaaagagaagctgggagtaggggttgtctgtgtctttg 652  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4835108 acactttaattttgttgaaacctagtgtactagatgtctgctagctaggtaattaaggaaagaaaagagaagctgggagtaggggttgtctgtgtctttg 4835207  T
Q  653 ctaagctaacatttctagcactattaattnnnnnnntggtgtatttgggttacatatttggtactgtcatcactgtaaaatctgggcttaatgaagcagc 752  Q
    ||||| |||| ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4835208 ctaagataacttttctagcactattaattaaaaaagtggtgtatttgggttacatatttggtactgtcatcactgtaaaatctgggcttaatgaagcagc 4835307  T
Q  753 acagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatttacaacaacaaaactgtagtcatggattgc 852  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4835308 acagccgcaaaattagtagaatgcgtaaacaacaagtaaacatgtttctttttctgtagctagcttaatttacatcaacaaaactgtagtcatggattgc 4835407  T
Q  853 tgaattatagtgactgaccctttacttcaacaaactagggtaggtttggtcttctttattaatcaacgtctctactttctttttgtatcaattattacta 952  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  4835408 tgaattatagtgactgaccctttacttcaacaaactagggtaggcttggtcttctttattaatcaacgtctctactttctttttgtatcaattattatta 4835507  T
Q  953 tag 955  Q
    |||    
T  4835508 tag 4835510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 73 - 455
Target Start/End: Original strand, 4834606 - 4834999
Alignment:
Q  73 tcatgttagccaggtgctcttggtcccaaaaccacctctcaccttcccagcgagctttaattcacaccattacatttgttattaggcttaattaacacaa 172  Q
    |||||||||| ||||| ||||| |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4834606 tcatgttagctaggtgttcttgctcccaaaaccacctc--accttcccagtgagctttaattcacaccattacatttgttattaggcttaattaacacaa 4834703  T
Q  173 ttaccttacaaactttaattaatctcatccaactacgcaaatagaatatcaaggcatattatacaaacaatcaacatgaat-aaaatacaagttggtgta 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4834704 ttaccttacaaactttaattaatctcatccaactacgcaaatagaatatcaaggcatattatacaaacaatcaacatgaattaaaatacaagttggtgta 4834803  T
Q  272 tttttgaaatcaaatttcacctgggtgtcgttggtttttagtgtcatgtgtctttagtgtacaccaaaggttaacgactcataagtgaaatccgatcacg 371  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4834804 tttttgaaatcaaatttcacttgggtgtcgttggtttttagtgtcatgtgtctttagtgtacaccaaaggttaacgactcataagtgaaatccgatcacg 4834903  T
Q  372 atgaatttgaaaaagagcagtgatatttgaacatccatttgagac------------aacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| ||||| ||||||||||||||| |||||||||            |||||||||||||||||||||||||||||||||||||||    
T  4834904 atgaatttgaaaacgagcaatgatatttgaacatctatttgagacaactcttgtgataacttcttttctctctcttttcattggtcaagaacaatg 4834999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 390 - 455
Target Start/End: Complemental strand, 42909885 - 42909820
Alignment:
Q  390 agtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  42909885 agtgttatttgaacaaccatatgagacaacttcttttctctctcttttcattggtcaaaaacaatg 42909820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 471986 - 471915
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| |||| ||||||||||  ||| |||||||||||||||| ||||||||||||||| |||| |||||||    
T  471986 aagagtagtgttatttgaacaatcatatgagacaacttcttttttctctcttttcattgatcaaaaacaatg 471915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 392 - 444
Target Start/End: Original strand, 21575722 - 21575774
Alignment:
Q  392 tgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    ||||||||||||| |||||||||||||||||| || ||| |||||||||||||    
T  21575722 tgatatttgaacaaccatttgagacaacttctattttctttcttttcattggt 21575774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 12718304 - 12718350
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||    
T  12718304 tttgtgacaacttcttttctctttcttttcattggtcaaaaacaatg 12718350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 12779530 - 12779576
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||||||| |||||||||||||||| |||||||    
T  12779530 tttgtgacaacttcttttctctttcttttcattggtcaaaaacaatg 12779576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 17625944 - 17625889
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    ||||||||||||||||||| |||||||    
T  17625944 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcctttcatt 17625889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 18449422 - 18449368
Alignment:
Q  390 agtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    ||||||||||||| | |||||| | |||||||||||| |||||||||||||||||    
T  18449422 agtgatatttgaagaaccatttcatacaacttcttttttctctcttttcattggt 18449368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 379 - 421
Target Start/End: Original strand, 20719897 - 20719939
Alignment:
Q  379 tgaaaaagagcagtgatatttgaacatccatttgagacaactt 421  Q
    |||| ||||| ||||||||||||||||||||||||||||||||    
T  20719897 tgaagaagagtagtgatatttgaacatccatttgagacaactt 20719939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 20719939 - 20719977
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  20719939 tttgtgacaacttcttttctctctcttttcattggtcaa 20719977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 31284318 - 31284364
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||||||||||||||||||||| || |||||||    
T  31284318 tttgcgacaacttcttttctctctcttttcattggttaaaaacaatg 31284364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 39595421 - 39595375
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  39595421 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 39595375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 125239 - 125194
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||| ||||||||||||| |||||||||||||||||||| ||||||    
T  125239 tttgcgacaacttcttttttctctcttttcattggtcaaaaacaat 125194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 11306843 - 11306798
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||||||||||||| ||||||||||||||||| || ||||||    
T  11306843 tttgagacaacttcttttttctctcttttcattggttaaaaacaat 11306798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 19376061 - 19376102
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  19376061 gacaacttcttttttctctcttttcattggtcaaaaacaatg 19376102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 34767346 - 34767379
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||||||||||||||||||||||||    
T  34767346 gacaacttcttttctctctcttttcattggtcaa 34767379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 11666320 - 11666280
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  11666320 acaacttcttttttctctcttttcattggtcaaaaacaatg 11666280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 385 - 421
Target Start/End: Original strand, 40566104 - 40566140
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaactt 421  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40566104 agagtagtgatatttgaacatccatttgagacaactt 40566140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 5130302 - 5130348
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  5130302 tttgtgacaacttcttttttctctcttttcattggttaaaaacaatg 5130348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 28811575 - 28811529
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||| |||||| |||||||||||||||||||| |||||||    
T  28811575 tttgtgacaacctcttttttctctcttttcattggtcaaaaacaatg 28811529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 33567163 - 33567209
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||||||    
T  33567163 tttgtgacaatttcttttttctctcttttcattggtcaaaaacaatg 33567209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 34381159 - 34381113
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||| ||| |||||||||||||||||||| |||||||    
T  34381159 tttgtgacaacttcgtttttctctcttttcattggtcaaaaacaatg 34381113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 398 - 455
Target Start/End: Complemental strand, 8087957 - 8087900
Alignment:
Q  398 ttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||| |||  |||||||| ||||||  |||||||||||||||||||| |||||||    
T  8087957 ttgaacaaccaaatgagacaatttctttcttctctcttttcattggtcaaaaacaatg 8087900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 12910956 - 12910896
Alignment:
Q  386 gagcagtgatatttgaacatccatttgagacaacttctt--ttctctctcttttcattggt 444  Q
    |||||||||||||| |||| |||||| | ||||||| ||  ||||||||||||||||||||    
T  12910956 gagcagtgatatttaaacaaccatttcatacaacttttttcttctctctcttttcattggt 12910896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 455
Target Start/End: Complemental strand, 20040959 - 20040887
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaa-cttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||| ||||||||||||| |||||||  |||| |||||| | |||||||| ||||||||||| |||||||    
T  20040959 aaagagcaatgatatttgaacaaccatttggtacaaccttcttct-tctctcttctcattggtcaaaaacaatg 20040887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 4e-22; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 15141633 - 15141563
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  15141633 agagtagtgacatttgaacatccatttgagacaacttcttttctctctcttttcattagtcaaaaacaatg 15141563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 25270692 - 25270747
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  25270692 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 25270747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 444
Target Start/End: Complemental strand, 28014122 - 28014068
Alignment:
Q  390 agtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    |||||||||| |||| |||||| ||||||||| ||||||||||||||||||||||    
T  28014122 agtgatattttaacaaccatttaagacaacttattttctctctcttttcattggt 28014068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 22390294 - 22390253
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  22390294 gacaacttcttttctctctcttttcattggtcaaaaacaatg 22390253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 23344918 - 23344958
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  23344918 gacaacttcttttctctctcttttcattggtcaaaaacaat 23344958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 3091888 - 3091842
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  3091888 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 3091842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 12600195 - 12600149
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  12600195 tttgtgacaacttcttttttctctcttttcattggttaagaacaatg 12600149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 394 - 441
Target Start/End: Original strand, 13333287 - 13333338
Alignment:
Q  394 atatttgaacatccatttgagacaa----cttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||    
T  13333287 atatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 13333338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 36133121 - 36133075
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  36133121 tttgtgacaacttcttttttctctcttttcattggttaagaacaatg 36133075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 1889289 - 1889248
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  1889289 gacaacttcttttttctctcttttcattggtcaaaaacaatg 1889248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 6639401 - 6639442
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  6639401 gacaacttcttttctctctcttttcattggtaaaaaacaatg 6639442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 7086048 - 7086093
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||    
T  7086048 tttgtgacaacttattttctctctcttttcattggtcaaaaacaat 7086093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Complemental strand, 14714133 - 14714088
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||| ||||||||||||||||||||||||||||| |||| ||||||    
T  14714133 tttgtgacaacttcttttctctctcttttcattgatcaaaaacaat 14714088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 414 - 454
Target Start/End: Original strand, 2013214 - 2013254
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  2013214 gacaacttattttctctctcttttcattggtcaaaaacaat 2013254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 36376781 - 36376821
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||| |||||||||||||||||||| |||||||    
T  36376781 acaacttcttttttctctcttttcattggtcaaaaacaatg 36376821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 11164300 - 11164346
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  11164300 tttgtgacaacttcttttttctctcttttcattggttaaaaacaatg 11164346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 13104626 - 13104580
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||    
T  13104626 tttgtgacaacttattttttctctcttttcattggtcaaaaacaatg 13104580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 13711208 - 13711162
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  13711208 tttgtgacaacttcttttttctctcttttcattggttaaaaacaatg 13711162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 14140263 - 14140309
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||||||    
T  14140263 tttgtgacaatttcttttttctctcttttcattggtcaaaaacaatg 14140309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 32750145 - 32750099
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||    
T  32750145 tttgtgacaacttattttttctctcttttcattggtcaaaaacaatg 32750099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 39454171 - 39454217
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||  |||||| |||||||||||||||||||| |||||||    
T  39454171 tttgagacaatctcttttttctctcttttcattggtcaaaaacaatg 39454217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 44190011 - 44189973
Alignment:
Q  382 aaaagagcagtgatatttgaacatccatttgagacaact 420  Q
    ||||||| ||||||||||||||||||||| |||||||||    
T  44190011 aaaagagtagtgatatttgaacatccattcgagacaact 44189973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 420
Target Start/End: Complemental strand, 22390337 - 22390300
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaact 420  Q
    |||||| || ||||||||||||||||||||||||||||    
T  22390337 aaagagtagagatatttgaacatccatttgagacaact 22390300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 418 - 455
Target Start/End: Original strand, 25801744 - 25801781
Alignment:
Q  418 acttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||| |||||||||||||||||||| |||||||    
T  25801744 acttcttttttctctcttttcattggtcaaaaacaatg 25801781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 34442255 - 34442214
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||| ||||||||||||||||| ||||||||| |||||||    
T  34442255 gacaacctcttttctctctctttttattggtcaaaaacaatg 34442214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 42251849 - 42251882
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||| ||||||||||||||||||||    
T  42251849 gacaacttcttttttctctcttttcattggtcaa 42251882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 32171028 - 32171085
Alignment:
Q  390 agtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||    
T  32171028 agtgatatttgaacaaccatttgagacaatttcttttttctctcttttcattggtcaa 32171085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 833 - 891
Target Start/End: Complemental strand, 34126432 - 34126374
Alignment:
Q  833 aaactgtagtcatggattgctgaattatagtgactgaccctttacttcaacaaactagg 891  Q
    ||||||||||||||||| |||||||||| |||||| ||||||||| |||||||||||||    
T  34126432 aaactgtagtcatggatcgctgaattatggtgacttaccctttacatcaacaaactagg 34126374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 7701492 - 7701437
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  7701492 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 7701437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Original strand, 46022377 - 46022432
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  46022377 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 46022432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 2790319 - 2790278
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  2790319 gacaacttcttttctctctcttttcattggtcaaaaacaatg 2790278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 10656777 - 10656733
Alignment:
Q  411 tgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  10656777 tgagacaacttcttttctctctcttttcattagtcaaaaacaatg 10656733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 28861996 - 28862067
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| |||||||||||||||  |||||| ||||||||||||| || |||||||||| ||| || |||||||    
T  28861996 aagagtagtgatatttgaacaatcatttgtgacaacttcttttttccctcttttcatcggttaaaaacaatg 28862067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 384 - 442
Target Start/End: Complemental strand, 43657186 - 43657129
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattg 442  Q
    ||||| ||||||||||||||| |||||| | ||||||| ||||||||||||||||||||    
T  43657186 aagagtagtgatatttgaacaaccatttcatacaactt-ttttctctctcttttcattg 43657129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 5378768 - 5378728
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||||||||||||||||||||||| |||||||    
T  5378768 acaatttcttttctctctcttttcattggtcaaaaacaatg 5378728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 30982253 - 30982313
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    ||||| ||||||||||||||| ||||||  |||||||||||||  ||||||||| ||||||    
T  30982253 aagagtagtgatatttgaacaaccatttttgacaacttctttttcctctctttttattggt 30982313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 34348957 - 34348997
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||| || |||||||    
T  34348957 acaacttcttttctctctcttttcattggtaaaaaacaatg 34348997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 384 - 426
Target Start/End: Complemental strand, 29355516 - 29355474
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttctttt 426  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||    
T  29355516 aagagtagtgatatttgaacaaccatttaagacaacttctttt 29355474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 417 - 455
Target Start/End: Original strand, 42204658 - 42204696
Alignment:
Q  417 aacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||| |||||||||||||||||||| |||||||    
T  42204658 aacttcttttttctctcttttcattggtcaaaaacaatg 42204696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 44894398 - 44894444
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  44894398 tttgtgacaacttcttttatctctcttttcattggtaaaaaacaatg 44894444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 5978721 - 5978680
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||| || |||||||||||||||||||| |||||||    
T  5978721 gacaacttctattttctctcttttcattggtcaaaaacaatg 5978680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 39875738 - 39875779
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| ||||||| |||||||||||||||||||| |||||||    
T  39875738 gacaatttcttttttctctcttttcattggtcaaaaacaatg 39875779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 46651814 - 46651773
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||| || |||||||||||||||||||| |||||||    
T  46651814 gacaacttctattttctctcttttcattggtcaaaaacaatg 46651773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 383 - 454
Target Start/End: Original strand, 3624348 - 3624419
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| ||||||||| ||| || || ||||||    
T  3624348 aaagagcagtgatatttgaacaaccatttgagacaacttattttccctctcttttgatttgtaaaaaacaat 3624419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 395 - 454
Target Start/End: Complemental strand, 46912059 - 46912000
Alignment:
Q  395 tatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||||| |||| ||||||||||| |||| |||||||||||||||||||| ||||||    
T  46912059 tatttgaacaaccatatgagacaacttattttttctctcttttcattggtcaaaaacaat 46912000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 34616519 - 34616464
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  34616519 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 34616464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 392 - 455
Target Start/End: Complemental strand, 34974617 - 34974554
Alignment:
Q  392 tgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| | | ||| ||||||||||||| |||| ||||||||||||||| |||||||    
T  34974617 tgatatttgaacaactaattgtgacaacttcttttttctcacttttcattggtcaaaaacaatg 34974554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 384 - 455
Target Start/End: Original strand, 41119425 - 41119496
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| |||| |||||||||| |||  ||||||||||| ||||  ||||||||||||||||||| |||||||    
T  41119425 aagagtagtgttatttgaacaaccaaatgagacaacttttttttcctctcttttcattggtcaaaaacaatg 41119496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 9162213 - 9162167
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  9162213 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 9162167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Complemental strand, 36513034 - 36512992
Alignment:
Q  376 atttgaaaaagagcagtgatatttgaacatccatttgagacaa 418  Q
    ||||||||||||||| ||||||||||| |||||||||||||||    
T  36513034 atttgaaaaagagcaatgatatttgaaaatccatttgagacaa 36512992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 55927131 - 55927085
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||    
T  55927131 tttgtgacaatttcttttctctctcttttcattggtcaaaaacaatg 55927085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 6953317 - 6953358
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  6953317 gacaacttcttttctctctcttttcattggttaaaaacaatg 6953358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 423
Target Start/End: Complemental strand, 25476807 - 25476766
Alignment:
Q  382 aaaagagcagtgatatttgaacatccatttgagacaacttct 423  Q
    ||||||| | ||||||||||||||||||||||||||||||||    
T  25476807 aaaagagtaatgatatttgaacatccatttgagacaacttct 25476766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 38844414 - 38844459
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||| |||||||| ||||||||||||||||||||||||| ||||||    
T  38844414 tttgtgacaacttattttctctctcttttcattggtcaaaaacaat 38844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 49195025 - 49194984
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||| ||||||||| |||||||    
T  49195025 gacaacttcttttctctctctttttattggtcaaaaacaatg 49194984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 46794399 - 46794471
Alignment:
Q  381 aaaaagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||| |||| |||||||||| |||  |||||||||||||||  | |||||||||||||||||| |||||||    
T  46794399 aaaatgagtagtgttatttgaacaaccaaatgagacaacttcttt--tttctcttttcattggtcaaaaacaatg 46794471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 426
Target Start/End: Complemental strand, 52851475 - 52851432
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaacttctttt 426  Q
    |||||| ||||||||||||||||||||  |||||||||||||||    
T  52851475 aaagagtagtgatatttgaacatccatccgagacaacttctttt 52851432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 383 - 418
Target Start/End: Complemental strand, 55927169 - 55927134
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaa 418  Q
    |||||| |||||||||||||||||||||||||||||    
T  55927169 aaagagtagtgatatttgaacatccatttgagacaa 55927134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 438
Target Start/End: Original strand, 56364159 - 56364211
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttc 438  Q
    |||||||||||||||||||||||||    |||||||| |||||||||||||||    
T  56364159 agtgatatttgaacatccatttgagacaaacaacttcgtttctctctcttttc 56364211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 4896424 - 4896470
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||| |||||| |||||||||||||||||||| |||||||    
T  4896424 tttgtgacaacctcttttttctctcttttcattggtcaaaaacaatg 4896470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 420
Target Start/End: Original strand, 16004220 - 16004250
Alignment:
Q  390 agtgatatttgaacatccatttgagacaact 420  Q
    |||||||||||||||||||||||||||||||    
T  16004220 agtgatatttgaacatccatttgagacaact 16004250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 444
Target Start/End: Original strand, 28480467 - 28480497
Alignment:
Q  414 gacaacttcttttctctctcttttcattggt 444  Q
    |||||||||||||||||||||||||||||||    
T  28480467 gacaacttcttttctctctcttttcattggt 28480497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 444
Target Start/End: Original strand, 28481341 - 28481371
Alignment:
Q  414 gacaacttcttttctctctcttttcattggt 444  Q
    |||||||||||||||||||||||||||||||    
T  28481341 gacaacttcttttctctctcttttcattggt 28481371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 444
Target Start/End: Original strand, 28482216 - 28482246
Alignment:
Q  414 gacaacttcttttctctctcttttcattggt 444  Q
    |||||||||||||||||||||||||||||||    
T  28482216 gacaacttcttttctctctcttttcattggt 28482246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 31275293 - 31275247
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| ||||||| |||||||||||||||||||| |||||||    
T  31275293 tttgtgacaatttcttttttctctcttttcattggtcaaaaacaatg 31275247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 31658066 - 31658020
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||| ||||||||||||||| |||||||    
T  31658066 tttgtgacaacttcttttttctcacttttcattggtcaaaaacaatg 31658020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 444
Target Start/End: Complemental strand, 36792474 - 36792444
Alignment:
Q  414 gacaacttcttttctctctcttttcattggt 444  Q
    |||||||||||||||||||||||||||||||    
T  36792474 gacaacttcttttctctctcttttcattggt 36792444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 45779187 - 45779261
Alignment:
Q  382 aaaagagcagtgatatttgaacatccatttga-gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||| ||||||||| ||||| |||| | ||||| ||  |||||||||||||| ||||||||| |||||||    
T  45779187 aaaagagcaatgatatttgtacatctatttaatgacaattttgtttctctctcttttgattggtcaaaaacaatg 45779261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 420
Target Start/End: Complemental strand, 24772848 - 24772819
Alignment:
Q  391 gtgatatttgaacatccatttgagacaact 420  Q
    ||||||||||||||||||||||||||||||    
T  24772848 gtgatatttgaacatccatttgagacaact 24772819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 417 - 454
Target Start/End: Original strand, 25523128 - 25523165
Alignment:
Q  417 aacttcttttctctctcttttcattggtcaagaacaat 454  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  25523128 aacttattttctctctcttttcattggtcaaaaacaat 25523165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 31240790 - 31240749
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| ||||||||||||||||| || |||||||    
T  31240790 gacaacttcttttttctctcttttcattggttaaaaacaatg 31240749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 409 - 454
Target Start/End: Original strand, 42915143 - 42915188
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||| ||||||||||||| ||||||||||||||||| || ||||||    
T  42915143 tttgtgacaacttcttttttctctcttttcattggttaaaaacaat 42915188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 28927828 - 28927782
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  28927828 tttgtgacaacttcttttctctctcttttcattggtcaaaaacaatg 28927782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 381 - 455
Target Start/End: Original strand, 41344553 - 41344639
Alignment:
Q  381 aaaaagagcagtgatatttgaacatccatttgagac------------aacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||| |||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||| |||||||    
T  41344553 aaaaagagtagtgatatttgaacatccatttgagacaactcttatgataacttcttttctctctcttttcattggtcaaaaacaatg 41344639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 384 - 455
Target Start/End: Complemental strand, 426272 - 426202
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| ||||||||||||||| |  | || ||||||||||||| |||||||||||||||||||| |||||||    
T  426272 aagagtagtgatatttgaacaact-tatgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 426202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 384 - 447
Target Start/End: Complemental strand, 42996634 - 42996571
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||| |||| ||||||||||  ||  |||||||||||||||| ||||||||||||||||||||    
T  42996634 aagagtagtgttatttgaacaatcaaatgagacaacttcttttttctctcttttcattggtcaa 42996571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 22767277 - 22767231
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  22767277 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 22767231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 23258179 - 23258133
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  23258179 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 23258133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 26871186 - 26871145
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||| |||||||||||||||||||||||||||| |||||||    
T  26871186 gacaatttcttttctctctcttttcattggtcaaaaacaatg 26871145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 447
Target Start/End: Complemental strand, 27836322 - 27836289
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||||||||||||||||||||||||    
T  27836322 gacaacttcttttctctctcttttcattggtcaa 27836289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 42012517 - 42012558
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  42012517 gacaacttcttttctctctcttttcattggttaaaaacaatg 42012558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 415 - 454
Target Start/End: Complemental strand, 896048 - 896009
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  896048 acaacttcttttttctctcttttcattggtcaaaaacaat 896009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 37524352 - 37524398
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||| |||||| |||||||||||||||||||| |||||||    
T  37524352 tttgtgacaacctcttttttctctcttttcattggtcaaaaacaatg 37524398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 38128450 - 38128496
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||| ||||||||||||||| |||||||    
T  38128450 tttgtgacaacttcttttttctcacttttcattggtcaaaaacaatg 38128496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 385 - 418
Target Start/End: Original strand, 1370183 - 1370216
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaa 418  Q
    |||| |||||||||||||||||||||||||||||    
T  1370183 agagtagtgatatttgaacatccatttgagacaa 1370216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 3989047 - 3989006
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||| ||||| |||||||    
T  3989047 gacaacttcttttttctctcttttcattagtcaaaaacaatg 3989006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 447
Target Start/End: Original strand, 26507832 - 26507865
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||| ||||||||||||||||||||    
T  26507832 gacaacttcttttttctctcttttcattggtcaa 26507865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 37101615 - 37101656
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| ||||||||||||||||| || |||||||    
T  37101615 gacaacttcttttttctctcttttcattggttaaaaacaatg 37101656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 21217470 - 21217415
Alignment:
Q  390 agtgatatttgaacatccatttgaga----caacttcttttctctctcttttcatt 441  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  21217470 agtgatatttgaacatccatttgagataaacaacttcttttctctctcttttcatt 21217415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 44383116 - 44383061
Alignment:
Q  390 agtgatatttgaacatccatttgaga----caacttcttttctctctcttttcatt 441  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||    
T  44383116 agtgatatttgaacatccatttgagataaacaacttcttttctctctcttttcatt 44383061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 19418089 - 19418130
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  19418089 gacaacttcttttctctctcttttcattggtcaaaaacaatg 19418130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 455
Target Start/End: Original strand, 41112002 - 41112042
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  41112002 acaacttcttttctctctcttttcattggtcaaaaacaatg 41112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 385 - 447
Target Start/End: Original strand, 4209453 - 4209515
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    |||| ||| ||||||||||| |||||||||| || ||||||| | ||||||||||||||||||    
T  4209453 agagtagttatatttgaacaaccatttgagataatttcttttttttctcttttcattggtcaa 4209515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 11173597 - 11173551
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||||||||||||| |||||||    
T  11173597 tttgtgacaacttcttttttctctcttttcattggtcaaaaacaatg 11173551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 23592415 - 23592360
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||| ||||||||||||    
T  23592415 agtgatatttgaacatccatttgagacaaacaacttcttttctatctcttttcatt 23592360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 49131001 - 49130955
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||||||||||||||||||||||| ||||| |||||||    
T  49131001 tttgtgacaacttcttttctctctcttttcattagtcaaaaacaatg 49130955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 39604175 - 39604216
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  39604175 gacaacttcttttttctctcttttcattggtcaaaaacaatg 39604216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 46473270 - 46473229
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  46473270 gacaacttcttttttctctcttttcattggtcaaaaacaatg 46473229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 421
Target Start/End: Original strand, 20162588 - 20162619
Alignment:
Q  390 agtgatatttgaacatccatttgagacaactt 421  Q
    ||||||||||||||||||||||||||||||||    
T  20162588 agtgatatttgaacatccatttgagacaactt 20162619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 5188383 - 5188337
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  5188383 tttgtgacaacttcttttttctctcttttcattggttaaaaacaatg 5188337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 14207518 - 14207476
Alignment:
Q  413 agacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||| |||||||||| ||||||||| |||||||    
T  14207518 agacaacttcttttttctctctttttattggtcaaaaacaatg 14207476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 413 - 455
Target Start/End: Complemental strand, 14215266 - 14215224
Alignment:
Q  413 agacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||| |||||||||| ||||||||| |||||||    
T  14215266 agacaacttcttttttctctctttttattggtcaaaaacaatg 14215224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 20380813 - 20380859
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||| ||||||||||||||| |||||||    
T  20380813 tttgtgacaacttcttttttctcacttttcattggtcaaaaacaatg 20380859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 28269953 - 28269907
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||| |||||||||||||||| |||||||    
T  28269953 tttgcgacaacttcttttttctatcttttcattggtcaaaaacaatg 28269907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 29706050 - 29706004
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| ||||||||||||||||| || |||||||    
T  29706050 tttgtgacaacttcttttttctctcttttcattggtaaaaaacaatg 29706004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 31997988 - 31997950
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaactt 421  Q
    |||||| ||||||||||||||| ||||||||||||||||    
T  31997988 aaagagtagtgatatttgaacaaccatttgagacaactt 31997950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 37215155 - 37215201
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||    
T  37215155 tttgtgacaacttattttttctctcttttcattggtcaaaaacaatg 37215201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 35272169 - 35272128
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||| ||||||||| |||||||    
T  35272169 gacaacttcttttttctctctttttattggtcaaaaacaatg 35272128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 36799540 - 36799499
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||| ||| |||||||||||||||||||| |||||||    
T  36799540 gacaacttcatttttctctcttttcattggtcaaaaacaatg 36799499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 36869766 - 36869807
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||| || |||||||||||||||||||||||| |||||||    
T  36869766 gacaacctcatttctctctcttttcattggtcaaaaacaatg 36869807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 44365221 - 44365250
Alignment:
Q  414 gacaacttcttttctctctcttttcattgg 443  Q
    ||||||||||||||||||||||||||||||    
T  44365221 gacaacttcttttctctctcttttcattgg 44365250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 40610376 - 40610330
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||||||||||||||||||||||||||||| |||||||    
T  40610376 tttgtgacaacttcttttctctctcttttcattggtcaaaaacaatg 40610330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 390 - 441
Target Start/End: Complemental strand, 46907154 - 46907099
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctctcttttcatt 441  Q
    |||||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  46907154 agtgatatttgaacatccatttgagacaaacaacttcttttctctctcttttcatt 46907099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 378 - 455
Target Start/End: Original strand, 16836008 - 16836084
Alignment:
Q  378 ttgaaaaagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||| ||||||||||||||| |  |||| ||||||||||||| |||  ||||||||||||||| |||||||    
T  16836008 ttgaaaaagagtagtgatatttgaacaact-tttgtgacaacttcttttttcttacttttcattggtcaaaaacaatg 16836084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 50659121 - 50659162
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  50659121 gacaacttcttttctctctcttttcattggtcaaaaacaatg 50659162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 415 - 455
Target Start/End: Complemental strand, 28253156 - 28253116
Alignment:
Q  415 acaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||||||||||||||||||| |||||||    
T  28253156 acaacttcttttctctctcttttcattggtcaaaaacaatg 28253116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 447
Target Start/End: Original strand, 8849752 - 8849810
Alignment:
Q  390 agtgatatttgaacatccatttgaga-caacttcttttctctctcttttcattggtcaa 447  Q
    ||||||||||||||||| |||||| | |||| ||||||||||||||||| |||||||||    
T  8849752 agtgatatttgaacatctatttgaaaacaacatcttttctctctctttttattggtcaa 8849810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 10384670 - 10384629
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  10384670 gacaacttcttttctcactcttttcattggtcaaaaacaatg 10384629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 46948121 - 46948080
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||||||| |||||||||||||||| |||||||    
T  46948121 gacaacttcttttctctatcttttcattggtcaaaaacaatg 46948080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 444
Target Start/End: Complemental strand, 36418226 - 36418191
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggt 444  Q
    |||| |||||||||||||||||||||||||||||||    
T  36418226 tttgtgacaacttcttttctctctcttttcattggt 36418191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 409 - 444
Target Start/End: Complemental strand, 37690562 - 37690527
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggt 444  Q
    |||| |||||||||||||||||||||||||||||||    
T  37690562 tttgtgacaacttcttttctctctcttttcattggt 37690527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 421
Target Start/End: Complemental strand, 40610407 - 40610376
Alignment:
Q  390 agtgatatttgaacatccatttgagacaactt 421  Q
    ||||||||||||||||||||||||||||||||    
T  40610407 agtgatatttgaacatccatttgagacaactt 40610376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 420
Target Start/End: Complemental strand, 46948162 - 46948127
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaact 420  Q
    |||| |||||||||||||||||||||||||||||||    
T  46948162 agagtagtgatatttgaacatccatttgagacaact 46948127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 5477087 - 5477133
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||| |||||||||| ||||||||| |||||||    
T  5477087 tttgtgacaacttcttttttctctctttttattggtcaaaaacaatg 5477133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 447
Target Start/End: Original strand, 22389449 - 22389487
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    |||| ||||||||||||| ||||||||||||||||||||    
T  22389449 tttgtgacaacttcttttttctctcttttcattggtcaa 22389487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 36690496 - 36690542
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||||||||| |||||||||||||| |||||||    
T  36690496 tttgtgacaacttattttctctctattttcattggtcaaaaacaatg 36690542  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 36706597 - 36706643
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||||||||| |||||||||||||| |||||||    
T  36706597 tttgtgacaacttattttctctctattttcattggtcaaaaacaatg 36706643  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 39010961 - 39010915
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| |||| |||||||||||||||||||| |||||||    
T  39010961 tttgtgacaacttattttttctctcttttcattggtcaaaaacaatg 39010915  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 50141859 - 50141905
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||| || ||||||||||||||||||||||||| |||||||    
T  50141859 tttgtgacaatttattttctctctcttttcattggtcaaaaacaatg 50141905  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 432
Target Start/End: Original strand, 24981679 - 24981725
Alignment:
Q  390 agtgatatttgaacatccatttgag----acaacttcttttctctct 432  Q
    |||||||||||||||||||||||||    ||||||||||||||||||    
T  24981679 agtgatatttgaacatccatttgagacaaacaacttcttttctctct 24981725  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 28716327 - 28716290
Alignment:
Q  384 aagagcagtgatatttgaacatccatttgagacaactt 421  Q
    ||||| ||||||||||||||| ||||||||||||||||    
T  28716327 aagagtagtgatatttgaacaaccatttgagacaactt 28716290  T

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Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 43755572 - 43755609
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaact 420  Q
    |||||| | |||||||||||||||||||||||||||||    
T  43755572 aaagagtaatgatatttgaacatccatttgagacaact 43755609  T

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Target: scaffold0011 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 219593 - 219634
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  219593 gacaacttcttttctctctcttttcattggtcaaaaacaatg 219634  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Original strand, 34021056 - 34021141
Alignment:
Q  381 aaaaagagcagtgatatttgaacatccatttgagacaa------------cttcttttctctctcttttcattggtcaagaacaat 454  Q
    |||||||| |||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||| ||||||    
T  34021056 aaaaagagtagtgatatttgaacatccatttgagacaacttttttaacaacttcttttctctctcttttcattggtcaaaaacaat 34021141  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 2163862 - 2163803
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    |||| |||||||||| ||||  ||||||||||||||| |||||| |||||||||||||||    
T  2163862 agagtagtgatattttaacaatcatttgagacaacttattttctttctcttttcattggt 2163803  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 2175495 - 2175436
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    |||| |||||||||| ||||  ||||||||||||||| |||||| |||||||||||||||    
T  2175495 agagtagtgatattttaacaatcatttgagacaacttattttctttctcttttcattggt 2175436  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 25554420 - 25554354
Alignment:
Q  381 aaaaagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    |||||||| ||||||||||||||| ||||||  ||||||||| ||| |||||||||  |||||||||    
T  25554420 aaaaagagtagtgatatttgaacaaccatttttgacaacttcatttttctctctttctattggtcaa 25554354  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Original strand, 16336999 - 16337040
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||||||||| ||||||||||||||||||||||| |||||||    
T  16336999 gacaacttctattctctctcttttcattggtcaaaaacaatg 16337040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 414 - 455
Target Start/End: Complemental strand, 29383699 - 29383658
Alignment:
Q  414 gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||||||||| |||||||||||||||||||| |||||||    
T  29383699 gacaacttcttttttctctcttttcattggtcaaaaacaatg 29383658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 381 - 420
Target Start/End: Original strand, 16336954 - 16336993
Alignment:
Q  381 aaaaagagcagtgatatttgaacatccatttgagacaact 420  Q
    |||||||| | |||||||||||||||||||||||||||||    
T  16336954 aaaaagagtaatgatatttgaacatccatttgagacaact 16336993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 385 - 455
Target Start/End: Original strand, 1434564 - 1434634
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||||||| | |||||| |||| || |||||| | ||||||||||| |||| |||||||    
T  1434564 agagtagtgatatttgaacaactatttgatacaattttttttctttttcttttcattgatcaaaaacaatg 1434634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 455
Target Start/End: Complemental strand, 1897833 - 1897787
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||| |||||| |||||||||||||||||||| |||||||    
T  1897833 tttgtgacaacctcttttttctctcttttcattggtcaaaaacaatg 1897787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 447
Target Start/End: Complemental strand, 8395503 - 8395446
Alignment:
Q  390 agtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaa 447  Q
    |||| ||||||||||  ||| |||||||| || |||| ||||||||||||||||||||    
T  8395503 agtgttatttgaacaatcatatgagacaatttattttttctctcttttcattggtcaa 8395446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 383 - 420
Target Start/End: Original strand, 30906549 - 30906586
Alignment:
Q  383 aaagagcagtgatatttgaacatccatttgagacaact 420  Q
    |||||| |||||||||||||||||||||||| ||||||    
T  30906549 aaagagtagtgatatttgaacatccatttgaaacaact 30906586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 385 - 444
Target Start/End: Original strand, 18547 - 18606
Alignment:
Q  385 agagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggt 444  Q
    |||| |||||||||| ||||  ||||||||||||||| |||||| |||||||||||||||    
T  18547 agagtagtgatattttaacaatcatttgagacaacttattttctttctcttttcattggt 18606  T

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Target: scaffold0501 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 10440 - 10486
Alignment:
Q  409 tttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| |||||||| ||||||||||||||||||||||||| |||||||    
T  10440 tttgtgacaacttattttctctctcttttcattggtcaaaaacaatg 10486  T

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Target: scaffold0076 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 382 - 455
Target Start/End: Complemental strand, 11366 - 11293
Alignment:
Q  382 aaaagagcagtgatatttgaacatccatttgagacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    ||||||| |||||||||||||    | |||| |||||| |||||| |||||||||||||||||||| |||||||    
T  11366 aaaagagtagtgatatttgaaacaacttttgtgacaacctcttttttctctcttttcattggtcaaaaacaatg 11293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 385 - 455
Target Start/End: Complemental strand, 699 - 628
Alignment:
Q  385 agagcagtgatatttgaacatccatttga-gacaacttcttttctctctcttttcattggtcaagaacaatg 455  Q
    |||| ||||||||||| ||||||| |||| ||||||||  |||||||||||| | ||||||||| |||||||    
T  699 agagtagtgatatttgtacatccaattgatgacaactttgtttctctctcttcttattggtcaaaaacaatg 628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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