View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-20 (Length: 267)
Name: NF4464-Insertion-20
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-20 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 8 - 261
Target Start/End: Complemental strand, 17782903 - 17782650
Alignment:
| Q |
8 |
gttatcacaatcccaaaactaccgctcgttaacacttacctccaatctcgttcttcgtcatctactaatctccgtttcatccacctcccaaccgtagacc |
107 |
Q |
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| T |
17782903 |
gttatcacgatcccaaaactaccgctcgttaacacttacctccaatctcgttcttcgtcatctactaatctccatttcatccacctcccaaccgtagacc |
17782804 |
T |
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| Q |
108 |
ctcctgcacccgatcaataccaatccttcatcgcttacatctccctccttatacagaaacacaaaaccaacatcaaaaatacactcctcgacctcataaa |
207 |
Q |
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| T |
17782803 |
ctcctgcacccgatcaataccaatcctttatcgcttacatctccctccttatacagaaacacaaaaccaacatcaaaaatacactcctcgacctcataaa |
17782704 |
T |
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| Q |
208 |
aaccgactcggttaaactcgctgctttgtttgttgatatgttctccaacaccat |
261 |
Q |
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| T |
17782703 |
aaccgactcggttaaactcgctgctttgtttgttgatatgttctccaccaccat |
17782650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 20583239 - 20582995
Alignment:
| Q |
11 |
atcacaatcccaaaactaccgctcgttaacacttacctccaatctcgttcttcgtcatctactaatctccgtttcatccacctcccaaccgtagaccctc |
110 |
Q |
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| T |
20583239 |
atcaccataccaaagctaccactcgttaacacttacctccaatcacgtccttcctccgctgctaatctccgtttcatccacctccctaccatagaccctc |
20583140 |
T |
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| Q |
111 |
ctgcacccgatcaataccaatccttcatcgcttacatctccctccttatacagaaacacaaaaccaacatcaaaaatacactcctcgacctcataaaaac |
210 |
Q |
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| T |
20583139 |
ccacacccgatcaataccaatccttaatcgcttacatatccctcctcatacaaaaacacaaaaacaacatcaaaaacacactcctcaatctcacaaaaac |
20583040 |
T |
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| Q |
211 |
cgactcggttaaactcgctgctttgtttgttgatatgttctccaacaccat |
261 |
Q |
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| ||||| |||| ||||||||||||||| |||||||||| |||||| |
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| T |
20583039 |
caactcg------ctcgttgctttgtttgttgacatgttctccaccaccat |
20582995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 20563869 - 20563819
Alignment:
| Q |
212 |
gactcggttaaactcgctgctttgtttgttgatatgttctccaacaccata |
262 |
Q |
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|||||||||||||| | ||||||||||||||| |||||||||| ||||||| |
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| T |
20563869 |
gactcggttaaacttgttgctttgtttgttgacatgttctccaccaccata |
20563819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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