View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-21 (Length: 212)
Name: NF4464-Insertion-21
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-21 |
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| [»] scaffold0581 (1 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: scaffold0581 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 5983 - 5779
Alignment:
| Q |
8 |
catacttgaatactctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5983 |
catacttgaatactctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatg |
5884 |
T |
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| Q |
108 |
aggttgataagatcataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatctgttttttgc |
207 |
Q |
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| T |
5883 |
aggttgataagatcataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatctgttttttgc |
5784 |
T |
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| Q |
208 |
atcga |
212 |
Q |
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||||| |
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| T |
5783 |
atcga |
5779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 8 - 212
Target Start/End: Original strand, 25616932 - 25617136
Alignment:
| Q |
8 |
catacttgaatactctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatg |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
25616932 |
catacttgaatactctattgtagtgtgggtagtaaaatggtttctgatctataaaatcatcatcattgtcacttttacagtatgatttgtgtccaaaatg |
25617031 |
T |
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| Q |
108 |
aggttgataagatcataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatctgttttttgc |
207 |
Q |
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| T |
25617032 |
aggttgataagatcataacatcttttttgcacctcacacatttgaacctagcttaagcatagcaagtgagtcaaatacattgcttttatccgttttttgc |
25617131 |
T |
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| Q |
208 |
atcga |
212 |
Q |
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||||| |
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| T |
25617132 |
atcga |
25617136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 121
Target Start/End: Original strand, 13299015 - 13299090
Alignment:
| Q |
46 |
ggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatc |
121 |
Q |
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| T |
13299015 |
ggtttctgatctttaaaatcaccatcgctgtcacttttgcagtatgctttgtgcccacaaagagcttgataagatc |
13299090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 161
Target Start/End: Original strand, 13261127 - 13261254
Alignment:
| Q |
33 |
tgggtagtaaaatggtttctgatctataaaatcatcattattgtcacttttacagtatgatttgtgtccaaaatgaggttgataagatcataacatcttt |
132 |
Q |
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|||| ||| ||| |||||||||||||| |||||| ||| |||||| ||||| |||||| | |||| ||| | ||| ||||||||||| ||||| ||| |
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| T |
13261127 |
tgggcagtgaaaaggtttctgatctattaaatcaccatcattgtctcttttgcagtatactctgtgcccaccaagagcttgataagatcggaacat-ttt |
13261225 |
T |
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| Q |
133 |
tttgcacctcacacatttgaacctagctt |
161 |
Q |
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| T |
13261226 |
tccgcacctctcacagttgaacctggctt |
13261254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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