View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464-Insertion-22 (Length: 204)
Name: NF4464-Insertion-22
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-22 |
 | |
|
| [»] chr8 (2 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 59 - 204
Target Start/End: Complemental strand, 43631022 - 43630877
Alignment:
| Q |
59 |
tccttgaggtataatagcataattttcttcctttgtagcaatttcagttcacagtaatgttcttaccatatacacatacatcaaatttcagttcatatca |
158 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43631022 |
tccttgaggtataacagcataattttcttccttcgtagcaatttcagttcacagtaatgttcttaccatatacacatacatcaaatttcagttcatatca |
43630923 |
T |
|
| Q |
159 |
tcaataactgaatgttccatacacacagagcttttttacagtttga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43630922 |
tcaataactgaatgttccatacacacagagcttttttacagtttga |
43630877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 43631060 - 43631022
Alignment:
| Q |
6 |
cacaatcaagtccactcagcagcgccgctttcgcccact |
44 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43631060 |
cacaatcaagtccattcagcagcgccgctttcgcccact |
43631022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University