View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-25 (Length: 169)
Name: NF4464-Insertion-25
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-25 |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 31074652 - 31074813
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
31074652 |
gatggtgtactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacc |
31074751 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
31074752 |
tagcttttgctccactagaagattgattattggtattaatcgaagtggaagtctcattccta |
31074813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 35740459 - 35740298
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||| ||| |
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| T |
35740459 |
gatggattactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcatgcactagcttccaacc |
35740360 |
T |
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| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
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|||||||||||| || |||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
35740359 |
tagcttttgctccacaagaagattgattattggtattaatcaaagtggaagtctcattccta |
35740298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 8 - 165
Target Start/End: Complemental strand, 9676867 - 9676710
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
9676867 |
gatggtttactagttggtgtttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcgctagcttccgaca |
9676768 |
T |
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| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcatt |
165 |
Q |
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|| |||||||| ||||||||||| ||||||| |||||||| |||||||||||||||| |
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| T |
9676767 |
cagattttgctccactagaagattgattattgatattaatccaagtggaagtctcatt |
9676710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 134; Significance: 5e-70; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 10901055 - 10901216
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
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|||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10901055 |
gatggtttactagttggttcttgagtaaattcaacactcttagatttttattgtttgttagctggaccataacttgaggtgcttgcactaacttccgacc |
10901154 |
T |
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| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
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|||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
10901155 |
tagcttttgctccactagaagattgattattagtattaatcgaagtggaagtctcattccta |
10901216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 134; Significance: 5e-70; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 18239114 - 18238953
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
18239114 |
gatggtttactagttggtgcttgagtagattctacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcatccgacc |
18239015 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
18239014 |
tagcttttgctccactagaagattgattattggtattaatcgaagtggaagtctcattccta |
18238953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 34575822 - 34575661
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34575822 |
gatgatttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacc |
34575723 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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| T |
34575722 |
tagcttttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattccta |
34575661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 25986002 - 25986163
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||| | ||||||||||||||||| |||||||| |
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| T |
25986002 |
gatggtttactagttggtgcttgagtagattcaacactcttaggtttatgttgtttgttagctggatcataatttgaggtgcttgcactagcttccgaca |
25986101 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
25986102 |
cagcttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattccta |
25986163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 169
Target Start/End: Complemental strand, 35421668 - 35421507
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |
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|
| T |
35421668 |
gatggtttactagttggtgcttgagtagattcaacactcttaggtttttgttgtttgttagctgaaccataacttgaggtgcttgcactagcttccgacc |
35421569 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|| ||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
35421568 |
taacttttgctccactagaagattgattattggtgttaatcgaagtggaagtctcattccta |
35421507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 8e-35
Query Start/End: Original strand, 67 - 169
Target Start/End: Original strand, 53667944 - 53668046
Alignment:
| Q |
67 |
agctggaccatcacttgaggtgcttgcactaacttccgacctagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattc |
166 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
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|
| T |
53667944 |
agctggaccataacttgaggtgcttgcactagcttccgacacagcttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattc |
53668043 |
T |
|
| Q |
167 |
cta |
169 |
Q |
| |
|
||| |
|
|
| T |
53668044 |
cta |
53668046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 41
Target Start/End: Original strand, 53667911 - 53667944
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaa |
41 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
53667911 |
gatggtttactagttggtgcttgagtagattcaa |
53667944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 129; Significance: 5e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 5640925 - 5640765
Alignment:
| Q |
9 |
atggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
5640925 |
atggtttactagttggtgcttgagtagattcaacactcttagctttttgttgtttgttagctggaccataacttgaggtgcttgcactagcttccgacct |
5640826 |
T |
|
| Q |
109 |
agcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5640825 |
agctttttctccactaaaagattggttattggtattaatcgaagtggaagtctcattccta |
5640765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 7e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 7e-63
Query Start/End: Original strand, 8 - 169
Target Start/End: Original strand, 12716344 - 12716505
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
12716344 |
gatggtttactagttggtgcttgagtagattcaacactcttaggtttttattgtttgttagctggaccataacttgaggtgcttgcactagcttccgaca |
12716443 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
| ||||||||||| ||||||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12716444 |
caacttttgctcaattagaagattgattattgatattaatcgaagtggaagtctcattccta |
12716505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 94 - 169
Target Start/End: Complemental strand, 42711364 - 42711289
Alignment:
| Q |
94 |
actaacttccgacctagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|||| |||||||||||||| |||||| ||||||||||| |||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42711364 |
actagcttccgacctagctcttgctccactagaagattgattattggtaataatcgaagtggaagtctcattccta |
42711289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 4e-61; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 4e-61
Query Start/End: Original strand, 8 - 166
Target Start/End: Complemental strand, 5197004 - 5196846
Alignment:
| Q |
8 |
gatggtttactagttggtgcttgagtagattcaacactcttagatttttgttgtttgttagctggaccatcacttgaggtgcttgcactaacttccgacc |
107 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| |||| |
|
|
| T |
5197004 |
gatggtttactagttggtgcttgagaagattcaacactcttaggtttttgttgtttgttagctggaccataacttgaggtgcttgcactagctttcgaca |
5196905 |
T |
|
| Q |
108 |
tagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattc |
166 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
5196904 |
cagcttttgctccactagaagattgattattgatattaatcgaagtggaagtctcattc |
5196846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 3e-37
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 31382450 - 31382540
Alignment:
| Q |
79 |
acttgaggtgcttgcactaacttccgacctagcttttgctcaactagaagatttattattggtattaatcgaagtggaagtctcattccta |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31382450 |
acttgaggtgcttgcactaacttccgacctagctcttgctccactagaagatttattattggtattaatcgaagtgaaagtctcattccta |
31382540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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