View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464-Insertion-27 (Length: 98)

Name: NF4464-Insertion-27
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464-Insertion-27
NF4464-Insertion-27
[»] chr6 (3 HSPs)
chr6 (8-98)||(13157137-13157227)
chr6 (8-98)||(13161993-13162083)
chr6 (8-98)||(13184912-13185002)


Alignment Details
Target: chr6 (Bit Score: 91; Significance: 1e-44; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 13157227 - 13157137
Alignment:
Q  8 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13157227 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 13157137  T

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Target: chr6; HSP #2
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 13162083 - 13161993
Alignment:
Q  8 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13162083 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 13161993  T

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Target: chr6; HSP #3
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 8 - 98
Target Start/End: Complemental strand, 13185002 - 13184912
Alignment:
Q  8 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13185002 caaagcaccttgaaggattgtagatcttaaaccttcattaggaaagatccaaaaggacactgcaccagctagaaaagcaggagtatagagc 13184912  T

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