View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-3 (Length: 893)
Name: NF4464-Insertion-3
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 514; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 337 - 893
Target Start/End: Original strand, 12273714 - 12274266
Alignment:
| Q |
337 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
436 |
Q |
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| T |
12273714 |
ctttctttaccttgtatgttttatagcaaaaatggatggaattgtttccaacaattgttgctagagcaagaactgttcaaattatagcttcaggtgcttc |
12273813 |
T |
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| Q |
437 |
tggccatgcaagtgggactcttcagctggtaggtgtcaaatgattgcttgaatttttatgatatgcttcaagatattgttgtattgataagcttgatttt |
536 |
Q |
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| T |
12273814 |
tggccatgcaagtgggactcttcagctggtaggtgtcaaatgattgcttgaatttttatgatatgcttcaagatattgttgtattgataagcttgatttt |
12273913 |
T |
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| Q |
537 |
tatgatattaacaagtttcacttgttagttgctatgtataacaatgataattcggcttaataaagagaggtcatgaacatccaacatgtgtcggtatcag |
636 |
Q |
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| T |
12273914 |
tatgatattaacaagtttcacttgttagttgctatgtataacaatgataattcggcttaataaagagaggtcatgaacatccaacatgtgtcggtatcag |
12274013 |
T |
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| Q |
637 |
acaccaacataacttcgacacacgcaacacaactagatatatattggtgtttacattgtctgtatgtttgtgttgtgtctgatgttcgtgtttggtgttt |
736 |
Q |
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| T |
12274014 |
acaccaacataactttgacacacgcgacacaactagatatatattggtgtttacattgtc--tatgtttgtgttgtgtctgatgttcatgttt-gtgttt |
12274110 |
T |
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| Q |
737 |
tataacgatctcctttgtgatgtgttttatatctttttgtttttctaaagttgctatttgaatattgaatgaacactaacatattgcatatttttgcgaa |
836 |
Q |
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| T |
12274111 |
tataacgatctcctttgtgatgtgttttatatctttttgtttttctaaaattgctatttgaatattgaatgaacactaacatattgcatatttttgcgaa |
12274210 |
T |
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| Q |
837 |
cagatgcacgcagaattccaagttctttctccgttggtggtccaccagagagactca |
893 |
Q |
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| T |
12274211 |
cagatgcacgcagaattccaagttctttctccgttggt-gtccaccagagagactca |
12274266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 257
Target Start/End: Original strand, 12273385 - 12273635
Alignment:
| Q |
7 |
aaaatcacttgctatggaacttgcagcttcttctatggctgagcttgttaagatgtgtcaaatgaatgaaccgctttggattcgtagcgagaatgatagg |
106 |
Q |
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| T |
12273385 |
aaaatcacttgctatggaacttgcagcttcttctatggctgagcttgttaagatgtgtcaaatgaatgaaccactttggattcgtagcgagaatgataga |
12273484 |
T |
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| Q |
107 |
gaagttcttaattttgatgagcatgctagggtttttcaatggcctttgaatcttaagcaaaggaatgagttaaggaatgaagctacgcgtgattctgctg |
206 |
Q |
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| T |
12273485 |
gaagttcttaattttgatgagcatgctagggtttttcaatggcctttgaatcttaagcaaaggaatgagttaaggaatgaagctacgcgtgattctgctg |
12273584 |
T |
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| Q |
207 |
ttgtaatcatgaatagtgtcactcttgttgatgcttttcttgatgctgtaa |
257 |
Q |
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| T |
12273585 |
ttgtaatcatgaatagtgttactcttgttgatgcttttcttgatgctgtaa |
12273635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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