View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-4 (Length: 835)
Name: NF4464-Insertion-4
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 456
Target Start/End: Original strand, 11636274 - 11636724
Alignment:
| Q |
8 |
gaatgatggagaacaaaagccacacaataaaacaagagtcagatttatttattttcaatatttggggtgtaaaaacggggacccgnnnnnnnccggaagc |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11636274 |
gaatgatggagaacaaaagccacacaataaaacaagagtcagatttatttattttcaatatttggggtgtaaaaacggggacccgtttttttccggaagc |
11636373 |
T |
|
| Q |
108 |
aagatgaaacgataggaaataacaagggtaaaaatgaattttaaataaattgataaggttaaatgtgaaataagaaatgataagttataaactacaaact |
207 |
Q |
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| T |
11636374 |
aagatgaaacgataggaaataacaagggtaaaaatgaattttaaataaattgataaggttaaatgtgaaataagaaatgataagttataaactacaagct |
11636473 |
T |
|
| Q |
208 |
caaatgc-tttttgaaacatcgtctaaa--------tcataagtttatgaatatgatgaaacgatgattattaaacaagactattttagttccacaagct |
298 |
Q |
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| T |
11636474 |
caaatgcttttttgaaacatcgtctaaaaaaataagtcataagtttatgaatatgatgaaatgatgattatcaaacaagactattttagttccacaagct |
11636573 |
T |
|
| Q |
299 |
aataagctataagctcattannnnnnnngggtttacaaaactgaaacataagctactcaagattataacaatttattcttccaaacaaattcgtcttttt |
398 |
Q |
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| T |
11636574 |
a-------ataagctcattattttttttgggtttacaaaattgaaacataagccactcaagattataacaatttattcttccaaacaaattcgtcttttt |
11636666 |
T |
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| Q |
399 |
gcacggtaaataaaatataaaaatctcctgaagcaaaggtggacgagagcgtaataat |
456 |
Q |
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| T |
11636667 |
gcacggtaaataaaatataaaaatctcctgaagtaaaggtggacgagatcgtaataat |
11636724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 465 - 835
Target Start/End: Original strand, 11636924 - 11637297
Alignment:
| Q |
465 |
ttaatactaaggaagcttcgaatcatgaaatgttgggaaaaaattgagcatcaattctttttgttgttgaaagcaaaacatgttaattttgttttttgtt |
564 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11636924 |
ttaatactaaggaagcttcgaatcatgaaatgttgggaaaaaattgagcatcaattctttttgttgttgaaagcaaaacatgttaattttgttttttgtt |
11637023 |
T |
|
| Q |
565 |
atcataattggtggtgtaatccgttagtttgtttgggtattgagttggtaatcatttacaatttaccgacaatacgttgttatttgggtgtaaaagttgg |
664 |
Q |
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| T |
11637024 |
atcataattggtggtgtaatccgttagtttgtttgggtatcgagttggtaatcatttacaatttatcgacaatacgttgttatttgggcgtaaaagttgg |
11637123 |
T |
|
| Q |
665 |
acgaa---tgttagagccttatatactattttggtatttgtttgaggcaatgtctggatttaaaagtgaacttttcataagagtttattgggttggtg-t |
760 |
Q |
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| T |
11637124 |
acgaatattgttagagccttatgtactatttt-gtatttgtttgaggcaatgtct-gatttaaaagtgaac-tttcataagagtttatt-ggttggtgtt |
11637219 |
T |
|
| Q |
761 |
agtgttaataatatttggttaactga-gcggcttcagtggtgaatgc-aaattgggaagtta-cttttgttgtttggg |
835 |
Q |
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||||||||| |||||||||||||||| |||||| | ||| ||||||| |||||||||||||| |||||||| |||||| |
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| T |
11637220 |
agtgttaatgatatttggttaactgaggcggctgcggtgttgaatgcaaaattgggaagttaccttttgttttttggg |
11637297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 10120772 - 10120705
Alignment:
| Q |
131 |
aagggtaaaaatgaattttaaataaattgataaggttaaatgtgaaataagaaa-tgataagttataa |
197 |
Q |
| |
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| T |
10120772 |
aagggtaaaaatgaattttaaataaaataataagggtaaatatgaaataaaaaattgataagttataa |
10120705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 616 - 718
Target Start/End: Complemental strand, 26132487 - 26132386
Alignment:
| Q |
616 |
tcatttacaatttaccgacaatacgttgttatttgggtgtaaaagttggacgaatgttagagccttatatactattttggtatttgtttgaggcaatgtc |
715 |
Q |
| |
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|||||| |||||| | || ||||| |||||||||| | ||||||| |||| |||||||||| ||| | | |||||||| |||||||||||||||||||| |
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| T |
26132487 |
tcatttgcaatttgctgataataccttgttatttgagagtaaaagatggatgaatgttagaatcttctgtgctattttg-tatttgtttgaggcaatgtc |
26132389 |
T |
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| Q |
716 |
tgg |
718 |
Q |
| |
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||| |
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| T |
26132388 |
tgg |
26132386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 538 - 572
Target Start/End: Original strand, 2157357 - 2157391
Alignment:
| Q |
538 |
caaaacatgttaattttgttttttgttatcataat |
572 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
2157357 |
caaaacatgttaattttgttttttgttatcataat |
2157391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 532 - 607
Target Start/End: Original strand, 29256036 - 29256110
Alignment:
| Q |
532 |
tgaaagcaaaacatgttaattttgttttttgttatcataattggtggtgtaatccgttagtttgtttgggtattga |
607 |
Q |
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| T |
29256036 |
tgaaagcaaaacatgttaattttg-tgtttgttatcataactgatggcttaacccattagtttgtttgggcattga |
29256110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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