View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464-Insertion-5 (Length: 831)

Name: NF4464-Insertion-5
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464-Insertion-5
NF4464-Insertion-5
[»] chr6 (1 HSPs)
chr6 (128-831)||(9488483-9489186)


Alignment Details
Target: chr6 (Bit Score: 652; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 128 - 831
Target Start/End: Complemental strand, 9489186 - 9488483
Alignment:
Q  128 gttacaaaagacacaaaataaactgtcggaaaacataaatgctaaccgcgggaaataatcatcctctaggagttagagaatctgttttctcacccttatt 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  9489186 gttacaaaagacacaaaataaactgtcggaaaacataaatgctaaccgctggaaataatcaacctctaggagttagagaatctgttttctcacccttatt 9489087  T
Q  228 ctatttaaaacgattcataaacacacaaatacattgtctattgaactaactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaac 327  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9489086 ctatttaaaacgattcctaaacacacaaatacattgtctattgaacttactaacaatactcatcgcaaaagcttcactttgtcctgaaggtgaaagaaac 9488987  T
Q  328 acattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgagttggtttacccaag 427  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  9488986 acattgtagaaaaaatgaatgctcctagatcaaatgttctattttttggcttcttcgaactcgcggttctgaagctggtcattgggttggtttacccaag 9488887  T
Q  428 cttttgtctccttagatttctctgctgcacattttctctggcgccatggcagtagcggtggatattgggacatgcacgtgacccaaatctgcacggtggt 527  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9488886 cttttgtctccttagatttctctgctacacattttctctggcgccatggcagtagcggtggatattcggacatgcacgtgacccaaatctgcacggtggt 9488787  T
Q  528 cagaatcttttctgcacttggcttggcctatacgactcaaaccaggtttgtgctttcttttgtttctgctatcatctaagtaacgtcaggtttcaccatc 627  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9488786 cagaatcttttctgcacttggcttggcctatacgactcaaaccaggtttgtgctttcttttgtttctgctatcatctaagtaacgtcaggtttcaccatc 9488687  T
Q  628 tatgttaattgcttcattgtcaccgatctttctttcccttccgtatcccaacttgagcatgacaattttgatgacaatggtggattgtccggtgctcgtg 727  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  9488686 gatgttaattgcttcattgtcaccgatctttctttcccttccgtatccaaacttgagcatgacaattttgatgacgatagtgggttgtccggtgctcgtg 9488587  T
Q  728 attatctgtttatattttggcctgcagcattttaatgtctcttttttctcttcgtctttccctttctgttcgcgcatttgcaggattcatccacaactgt 827  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9488586 attatctgtttatattttggcctgcagcattttaatgtctcttttttctcttcgtctttccctttctgttcgcgcatttgcaggattcttccacaactgt 9488487  T
Q  828 tcga 831  Q
    ||||    
T  9488486 tcga 9488483  T

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