View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464-Insertion-6 (Length: 805)
Name: NF4464-Insertion-6
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-6 |
 | |
|
| [»] scaffold0059 (1 HSPs) |
| | |
|
| [»] scaffold0554 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 621; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 621; E-Value: 0
Query Start/End: Original strand, 8 - 798
Target Start/End: Original strand, 12609981 - 12610772
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
12609981 |
aaaacttctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatacgata--cccatcaatc |
12610078 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
12610079 |
tcacatgcttgtccacattctcttggaagtaaaagaggacctggaggatgtaaccttaaggtctctttcacaactgactttaaataagtgagttcattta |
12610178 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
12610179 |
tacaattttcttcaacatttcctttcatgttgaatatatctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacattgc |
12610278 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaatgcaaggatatcaaaagagagagctaaaagagatattttg |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610279 |
ccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaagaaaatgcaaggatatcaaaagagagagctaaaagagatattttg |
12610378 |
T |
|
| Q |
408 |
atggcatccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataatgc-aaaaaattgcaaacatgtattctgattctatcgctg |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610379 |
atggcatccaataggtcatcacaaggttttaaatcgaggttgcatcacaatccttgataatgcaaaaaaattgcaaacatgtattctgattctatcgctg |
12610478 |
T |
|
| Q |
507 |
tcatcaagacatc-aaaaaccttgaattcgcgacacattgctaacttttnnnnnnnnta----tatatgttgttttaacatggcaaatagtggtattgtt |
601 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12610479 |
tcatcaagacatcaaaaaaccttgaattcgcgacacattgctaaactttaaaaaaaaaaaaataatatgttgttttaacatggcaaatagtggtattgtt |
12610578 |
T |
|
| Q |
602 |
ctaaagtattaaccattcaattcaatctaagctctgcaccaaggggtttattatccttaccaggattatagacttgatattgttatcagttaaaacatat |
701 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12610579 |
ctaaagtatcaaccattcaattcaatctaagctctacaccaaggggtttattatccttaccaggattatagacttgatattgttatcagtt-aaacatat |
12610677 |
T |
|
| Q |
702 |
atcttgggtgctctcattacccccttggaattttagaaggaatgtccacgagatcctcttcttctccaccttggactttcatttgcttttgactttg |
798 |
Q |
| |
|
||||||| |||| |||||||| |||||||||||||||| ||| ||| || ||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12610678 |
atcttggttgctgtcattaccaccttggaattttagaa-gaacgtctaccagatcttcttcttctccacctt-gactttcatttgcttttgactttg |
12610772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 15885886 - 15885548
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
15885886 |
aaaacctctctggttcagtccaatactttggatctcttccaatcgcccatgcattgactatcaccttgcttttggttggtatatgataa--ccatcaatc |
15885789 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| | |
|
|
| T |
15885788 |
tcacatgcttgttcacattctcttggaagtaaaagaggagctggagggtgtaaccttaaggtctctttcacaactgacttcaaataagtgagctcattaa |
15885689 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
|| | || || ||||| ||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| ||| || |
|
|
| T |
15885688 |
tatagttctcaccaacaattccttttgtgttgaacatttctcttacttcatcttgtgctttcttcatcactctttcatcccttaccaactctgccattgc |
15885589 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
||||||||| || | | |||||||| ||||||||||||| |
|
|
| T |
15885588 |
ccaaactatggtggtactcgatgtatctcctccagcaccaa |
15885548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 9 - 362
Target Start/End: Original strand, 12637078 - 12637426
Alignment:
| Q |
9 |
aaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatct |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||||| |||||| |||||||| ||| ||| ||||| | |
|
|
| T |
12637078 |
aaacctctctggttcagtccagtactttggatctctaccaattgtccatgcatttactatcaccttacttttggctggtatatgata--cccttcaattt |
12637175 |
T |
|
| Q |
109 |
cacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcatttat |
208 |
Q |
| |
|
||| |||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||| | || ||||| |||||||||||| |
|
|
| T |
12637176 |
cacatgcttgtccacattctct---aagtaaaagaggagttggagggtgtaaccttagagtctctttcactactaacttcaaatattcgagttcatttat |
12637272 |
T |
|
| Q |
209 |
acaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcc |
308 |
Q |
| |
|
| | ||||| ||||| |||||||| |||||||||||| ||| || |||| |||||||||||||||||||||| ||||||||| ||||||| ||| ||| |
|
|
| T |
12637273 |
atagttttcaccaacagttcctttcttgttgaatatttttctcacttcatattgtgctttcttcatcactcttggatcccttactaactctgccattgcc |
12637372 |
T |
|
| Q |
309 |
caaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaa |
362 |
Q |
| |
|
|||||||| |||| | |||||| |||||||||||||||| ||| | ||||||| |
|
|
| T |
12637373 |
caaactatggtagtggatgatgtttcacctccagcaccaatgatgtcctgaaaa |
12637426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 649 - 708
Target Start/End: Original strand, 12637632 - 12637690
Alignment:
| Q |
649 |
ttattatccttaccaggattatagacttgatattgttatcagttaaaacatatatcttgg |
708 |
Q |
| |
|
||||||| |||||||||||||||| |||||||||||| |||||| || |||||||||||| |
|
|
| T |
12637632 |
ttattatacttaccaggattatagccttgatattgttgtcagtt-aagcatatatcttgg |
12637690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 694
Target Start/End: Complemental strand, 15885430 - 15885377
Alignment:
| Q |
641 |
caaggggtttattatccttaccaggattatagacttgatattgttatcagttaa |
694 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||| ||||| |||||||| |
|
|
| T |
15885430 |
caaggggtttattatccttactaggagtacagccttgatgttgttgtcagttaa |
15885377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 151; Significance: 2e-79; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 8 - 376
Target Start/End: Original strand, 62229 - 62596
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| || ||||||||||| ||||||| ||| |||| |||||||||| ||| |||||||||| |
|
|
| T |
62229 |
aaaacctctctggttccgtccagtaccttggatctcttccgattgcccatgcattaactatcagctttgttttcattggtatatgata--cccatcaatc |
62326 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| ||||| || ||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||| ||| || | || ||||||||| | |
|
|
| T |
62327 |
tcacatgcttctctacattctcttggaagtaaaagagcacctggggggtgtaacctcagggtctctttcacaattgacttcacgtatttgagttcatgca |
62426 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
||||| |||| |||| | ||| ||||||||| |||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||||| ||| || |
|
|
| T |
62427 |
tacaactttcatcaaaagctcccttcatgttgtatatttctctcacttcatcttgtgctttcttcatcactcttggatctcttaccaactctgccattgc |
62526 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaacgatattctgaaaa-gaaaatgcaaggat |
376 |
Q |
| |
|
|||||||| | ||||||||||||||||||||||||||| || | ||||||| ||||||||||||| |
|
|
| T |
62527 |
ccaaactacgctcaaagctgatgtatcacctccagcaccaaacatgtcctgaaaattaaaatgcaaggat |
62596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 21779889 - 21780227
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||||| | || || || || | || |||| || |
|
|
| T |
21779889 |
aaaacatctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgattatcaccttagtcttaatcggaatgtggtaa--ccatttata |
21779986 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| |||||| | ||||||||| || | |||||||| |||||||||||| ||||||||| ||||| ||||||||||| |||||| |||||||||| | |
|
|
| T |
21779987 |
tcacatgcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactgatttcaaataattgagttcattga |
21780086 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
| |||||||| ||||| |||||||||| ||||| | |||||| || |||||||||||||||||||| | |||| ||||||||||| ||| ||| || |
|
|
| T |
21780087 |
tgcaattttcatcaacccttcctttcattttgaaaacttctctcacttcatcttgtgctttcttcattattcttggatcccttaccatttctaccattgc |
21780186 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||||||| |
|
|
| T |
21780187 |
ccaatctatggtgcttgctgatgtctcacctccagcaccaa |
21780227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 5e-43; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 8 - 344
Target Start/End: Original strand, 23145996 - 23146330
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||| ||||| |||||||||| |||||| | || || ||||| | ||| |||| || |
|
|
| T |
23145996 |
aaaacctctctggttcagtccagtagtttggatctcttgcaactgcccaagcattgactaacaccttagtcttaatcggtatgtgataa--ccatttata |
23146093 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| | |||| | ||||||||| || | |||||||| |||||||||||| ||||||||| ||||| |||||| |||| |||||| |||||||||| | |
|
|
| T |
23146094 |
tcacattcttgactacattctctcggtaacaaaagaggtgctggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattga |
23146193 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
| |||||||| ||||| |||||||||| ||||| | ||||| ||||||||||||||||||||||| | |||| |||| ||||||| ||| ||| || |
|
|
| T |
23146194 |
tgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcatgattcttggatcctttaccaattctaccattgc |
23146293 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagca |
344 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||| |
|
|
| T |
23146294 |
ccaatctatggtgcttgctgatgtctcacctccagca |
23146330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 13 - 348
Target Start/End: Original strand, 23032780 - 23033113
Alignment:
| Q |
13 |
ctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacc |
112 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||| | ||| |||| ||||||| |
|
|
| T |
23032780 |
ctctctggttcagtccagtagtttggatctcttgcaattgcccaagcattgactatcaccttacttttaattggtatgt--gataaccatttatctcaca |
23032877 |
T |
|
| Q |
113 |
tgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcatttatacaa |
212 |
Q |
| |
|
|||||| || ||||||||||| || |||||||| ||| |||||| ||||| | ||| ||||| || |||||||| |||||| |||| || || || |
|
|
| T |
23032878 |
tgcttgaccgcattctcttggtagcaaaagaggtactgtagggtggaacctaagggtttctttgacgactgatttcaaataattgagatcggggatgtaa |
23032977 |
T |
|
| Q |
213 |
ttttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaa |
312 |
Q |
| |
|
||||| ||||| ||||||||||| ||||| | ||||| |||||| |||||||||||||||| | || || ||| |||| || |||| |||||||||| |
|
|
| T |
23032978 |
ttttcatcaacctttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcgttgatctcttatcatttctgtcatcgcccaat |
23033077 |
T |
|
| Q |
313 |
ctatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| || |||||||| || ||||||||||||| |
|
|
| T |
23033078 |
ctatggtgcttgctgatgtctcgcctccagcaccaa |
23033113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 23039117 - 23039455
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
|||| ||||| || ||||||||||| |||||||||||| |||| ||||| ||||||||||||||||| || || || ||||| | ||| |||| ||| |
|
|
| T |
23039117 |
aaaatctctccggctcagtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttactcttaataggtatgtgataa--ccatttatc |
23039214 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| || ||| | |||||||||||| || |||||||| ||||||||||||||| | ||| ||||| |||||||| || |||||| |||||||||| | |
|
|
| T |
23039215 |
tcacatgtttgacgacattctcttggcagcaaaagaggtgttggagggtgtaacctcagggtttctttgacaactgacttcaaataattgagttcattga |
23039314 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
| |||||||| ||||| |||||||||| ||||| | ||||| ||||||||||| ||||||||||| | |||| |||||||| || ||| ||| || |
|
|
| T |
23039315 |
tgcaattttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcgctttcttcattattcttggatcccttatcatttctaccattgc |
23039414 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
||| |||| || |||||||| |||||||||||||||| |
|
|
| T |
23039415 |
ccagtctatggtgcttgctgatgtctcacctccagcaccaa |
23039455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 23148834 - 23149172
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||| |||| ||||| ||||||| |||||| || | || || || || | ||| |||| || |
|
|
| T |
23148834 |
aaaacctctctggttcagtccagtagtttgaatctcttgcaattgcccaagcattgattatcactttagtcttaatcggaatgtgataa--ccatttata |
23148931 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| ||||| | ||||||||| || | |||||||| | |||||||||| ||||||||| ||||| |||||| |||| |||||| |||||||||| | |
|
|
| T |
23148932 |
tcacacgcttgactacattctctcggtaacaaaagaggtgccggagggtgtagccttaaggtttctttgacaactaatttcaaataattgagttcattga |
23149031 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
| |||||||| ||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||||| | |||| |||| |||||| |||| ||| || |
|
|
| T |
23149032 |
tgcaattttcatcaacctttcctttcattttgaaaacctctctcacctcatcttgtgctttcttcattattcttggatcctttaccatctctaccattgc |
23149131 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| |||| || |||||||| || ||||||||||||| |
|
|
| T |
23149132 |
ccaatctatggtgcttgctgatgtctcgcctccagcaccaa |
23149172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 23024348 - 23024686
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||| |||| ||||| ||||||||||||||||| | || |||| || | ||| || || ||| |
|
|
| T |
23024348 |
aaaacctctctggttcggtccagtaatttggatctcttgcaattgcccaagcattgactatcaccttagtcttagttggaatgtcataa--ccgtctatc |
23024445 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
| || || ||| |||||||||| || | |||||| || | |||||||||||||| | ||| ||||| |||| |||||| |||||| | |||||||| | |
|
|
| T |
23024446 |
ttacatgattgagcacattctctcggtattaaaagtggtgccggagggtgtaacctcagggtttctttgacaattgatttcaaataattaagttcattga |
23024545 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||| || |||| |||||| |||||||||||||||| | |||| || | |||||| |||| ||| || |
|
|
| T |
23024546 |
tacaattctcttcaacccttcctttcatattgaaaatctctcgcacctcagcttgtgctttcttcattattcttggattctttaccatttctgccattgc |
23024645 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||||||| |
|
|
| T |
23024646 |
ccaatctatggtgcttgctgatgtctcacctccagcaccaa |
23024686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 8 - 348
Target Start/End: Original strand, 23036246 - 23036584
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |||| ||||| ||||| | | | ||||| || || || ||||| | ||| |||| ||| |
|
|
| T |
23036246 |
aaaatctctctggttcagtccagtaatttggatctcttgcaattgcccaagcatttattgttaccttactcttaataggtatgtgataa--ccatttatc |
23036343 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
||| |||||| |||| |||||||| || |||||||| ||||||||||||||| | ||| ||||| || |||||||| |||||| ||||||| || | |
|
|
| T |
23036344 |
acacatgcttgaacacactctcttggtagcaaaagaggtgttggagggtgtaacctcagggtttctttgacgactgatttcaaataaatgagttcgttga |
23036443 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
||||||| ||||| || |||||||||| ||||| | ||||| |||||| |||||||||||||||| | |||| || |||||||| |||| ||| || |
|
|
| T |
23036444 |
tacaattctcttcgacccttcctttcattttgaaaacctctctcacctcagcttgtgctttcttcattattcttggattccttaccatttctgccattgc |
23036543 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| |||| || |||||||| |||||||||||||||| |
|
|
| T |
23036544 |
ccaatctatggtgcttgctgatgtctcacctccagcaccaa |
23036584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 348
Target Start/End: Original strand, 23140128 - 23140460
Alignment:
| Q |
14 |
tctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacct |
113 |
Q |
| |
|
||||||||||||||||||| ||||||||||| | || |||||||||||||| | |||||| | || | |||||| | ||| |||| ||||||| | |
|
|
| T |
23140128 |
tctctggttcagtccagtagtttggatctctcgcgattgcccatgcattgacgaccaccttagtcttaaatggtatgtgataa--ccatgtatctcacat |
23140225 |
T |
|
| Q |
114 |
gcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcatttatacaat |
213 |
Q |
| |
|
||||| ||||| |||||||| || |||||||| | |||| ||||||||| ||||| ||||| || | |||||| |||||| ||| || || || |||| |
|
|
| T |
23140226 |
gcttgaccacactctcttggtagcaaaagaggcaccggagtgtgtaacctcaaggtttctttgacgattgatttcaaataatggagctcgttgatgcaat |
23140325 |
T |
|
| Q |
214 |
tttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgcccaaac |
313 |
Q |
| |
|
|||| ||||| |||||||||| ||||| | ||||| ||||||||||| |||||||||| | |||| |||||||| || ||| ||| |||||| | |
|
|
| T |
23140326 |
tttcatcaacccttcctttcattttgaaaacctctctcacctcatcttgcactttcttcattattcttggatcccttatcatttctaccattgcccaatc |
23140425 |
T |
|
| Q |
314 |
tatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
||| || |||||||| |||||||||||||||| |
|
|
| T |
23140426 |
tatggtgcttgctgatgtctcacctccagcaccaa |
23140460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 23017138 - 23017402
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| | || ||||| ||||| | ||||||||| | || | |||||| | ||| |||| ||| |
|
|
| T |
23017138 |
aaaacttctctggttcagtccagtagtttggatctcttgcgattgcccaagcattaattatcaccttagtcttaactggtatgtgataa--ccatgtatc |
23017235 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| ||||| |||||||||||||| || |||||||| ||| ||| ||||| || | ||| ||||| ||||||||||| | |||| |||||||||||| |
|
|
| T |
23017236 |
tcacatgctttaccacattctcttggtagcaaaagaggtactgaaggatgtaatctaagggtttctttgacaactgatttcagataactgagttcattta |
23017335 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcat |
274 |
Q |
| |
|
| || ||||| ||||| ||||||||| || | | || || || |||||||||||||||||||| |
|
|
| T |
23017336 |
tgcatttttcatcaacccgtcctttcatttttataacatccctcacttcatcttgtgctttcttcat |
23017402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 157
Target Start/End: Original strand, 22972035 - 22972174
Alignment:
| Q |
16 |
tctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgc |
115 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||| ||||| ||||||| ||||||| | |||||||||||||| | ||| ||||||||||||| || |
|
|
| T |
22972035 |
tctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctacttttgattggtatgt--gataaccatcaatctcacaagc |
22972132 |
T |
|
| Q |
116 |
ttgtccacattctcttggaagtaaaagaggacctggagggtg |
157 |
Q |
| |
|
||||||||| | ||||| | |||||||||||| |||||||| |
|
|
| T |
22972133 |
ttgtccacacacccttggtactaaaagaggaccaggagggtg |
22972174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 34 - 190
Target Start/End: Complemental strand, 22941472 - 22941318
Alignment:
| Q |
34 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
133 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| || |||| ||||||||||||||||||||| |
|
|
| T |
22941472 |
tttggatctcttccaatggcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatttcacatgcttgtccacattctcttgg |
22941375 |
T |
|
| Q |
134 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaa |
190 |
Q |
| |
|
||| |||| | | | |||||||| || || || |||||||||||||| ||||||| |
|
|
| T |
22941374 |
aagcaaaaatgcagcaggagggtgcaatctcaatgtctctttcacaacatattttaa |
22941318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 22831937 - 22832094
Alignment:
| Q |
34 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
133 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
22831937 |
tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttgg |
22832034 |
T |
|
| Q |
134 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaata |
193 |
Q |
| |
|
||| |||| | ||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
22832035 |
aagcaaaaatgttgacggagggtgtaatctcaatgtctctttcacaacgcattttaaata |
22832094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 148
Target Start/End: Original strand, 22946488 - 22946618
Alignment:
| Q |
16 |
tctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgc |
115 |
Q |
| |
|
||||| |||||||| || |||||||| |||||||| ||||| ||||||| ||||||| | || ||||||||||| | ||| ||||||||||||| ||| |
|
|
| T |
22946488 |
tctggatcagtccaatattttggatcccttccaattgcccaagcattgattatcaccctactattgattggtatgt--gataaccatcaatctcacatgc |
22946585 |
T |
|
| Q |
116 |
ttgtccacattctcttggaagtaaaagaggacc |
148 |
Q |
| |
|
|||| |||| | || |||| |||||||||||| |
|
|
| T |
22946586 |
ttgtgcacacaccctaggaattaaaagaggacc |
22946618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 34 - 181
Target Start/End: Complemental strand, 22916769 - 22916624
Alignment:
| Q |
34 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
133 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||| |||| |||||||| || |||| |||||||||||| || ||||| |
|
|
| T |
22916769 |
tttggatctcttccaatggcccaagcattcactatcactttgcttttaaatgg--tataccatacccatttatttcacatgcttgtccacactcccttgg |
22916672 |
T |
|
| Q |
134 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaac |
181 |
Q |
| |
|
| ||||| | || ||||| ||||| || || |||||||||||||| |
|
|
| T |
22916671 |
caataaaaatgctccaggaggatgtaatctcaatgtctctttcacaac |
22916624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 74; Significance: 2e-33; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 8 - 348
Target Start/End: Complemental strand, 6678 - 6340
Alignment:
| Q |
8 |
aaaacctctctggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatc |
107 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||| |||| ||||| ||||||| ||||||||| || | | ||||| | |||| |||| ||| |
|
|
| T |
6678 |
aaaacctctctggttcagtccagaagtttggatctcttgcaattgcccaagcattgattatcaccttactcctaaacggtatgt--tataaccatttatc |
6581 |
T |
|
| Q |
108 |
tcacctgcttgtccacattctcttggaagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaataagtgagttcattta |
207 |
Q |
| |
|
|||| ||||| |||||||||||||| || |||||||| |||||||||||||||| | ||| ||||| || |||||||| |||||| |||||| | | |
|
|
| T |
6580 |
tcacatgctttaccacattctcttggtagcaaaagaggtgctggagggtgtaacctaagggtttctttgacgactgatttcaaataattgagtttgctaa |
6481 |
T |
|
| Q |
208 |
tacaattttcttcaacatttcctttcatgttgaatatttctcttacctcatcttgtgctttcttcatcactcttttatcccttaccaactctgacatcgc |
307 |
Q |
| |
|
| ||||||| ||||| ||||| |||| | || | ||||| |||||| ||||||||||| |||| | |||| ||||||| || |||| ||| || |
|
|
| T |
6480 |
tgtaattttcatcaacctttccattcaatgtaaaaacttctcgcacctcagcttgtgctttcatcattattcttggctcccttatcatttctgccattgc |
6381 |
T |
|
| Q |
308 |
ccaaactatagtagaagctgatgtatcacctccagcaccaa |
348 |
Q |
| |
|
|||| |||| || | ||||||||||||||||||||||||| |
|
|
| T |
6380 |
ccaatctatggtggttgctgatgtatcacctccagcaccaa |
6340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 34 - 193
Target Start/End: Complemental strand, 5594128 - 5593971
Alignment:
| Q |
34 |
tttggatctcttccaatcgcccatgcattgactatcaccttgcttttgattggtatataatatacccatcaatctcacctgcttgtccacattctcttgg |
133 |
Q |
| |
|
||||||||||||||||| ||||| ||||| |||||||| |||||||| | ||||||| |||||||| ||||||| ||||| ||||||||||||||| |
|
|
| T |
5594128 |
tttggatctcttccaatagcccaagcattcactatcactttgcttttaaaaggtatat--catacccatttatctcacatgcttttccacattctcttgg |
5594031 |
T |
|
| Q |
134 |
aagtaaaagaggacctggagggtgtaaccttaaggtctctttcacaactgattttaaata |
193 |
Q |
| |
|
||| |||| | ||||||||||| || || |||||||||||||| |||||||||| |
|
|
| T |
5594030 |
aagcaaaaatgttgacggagggtgtaatctcaatgtctctttcacaacgcattttaaata |
5593971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 41465854 - 41465802
Alignment:
| Q |
19 |
ggttcagtccagtactttggatctcttccaatcgcccatgcattgactatcac |
71 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
41465854 |
ggttcactccaatactttggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 41305343 - 41305309
Alignment:
| Q |
31 |
tactttggatctcttccaatcgcccatgcattgac |
65 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
41305343 |
tactttggatctcttccaatcgcccaagcattgac |
41305309 |
T |
|
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