View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-7 (Length: 803)
Name: NF4464-Insertion-7
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-7 |
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| [»] scaffold0743 (2 HSPs) |
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| [»] scaffold1819 (1 HSPs) |
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| [»] scaffold1104 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 168 - 713
Target Start/End: Complemental strand, 4286 - 3744
Alignment:
| Q |
168 |
aatgtttaactattctagatgtaattgtaagagaaattttgtttttcagggttgtggttgtaaagactctggtgattgtagctctaatgataattgtgtt |
267 |
Q |
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| T |
4286 |
aatgtttaactattctagatgtaattgtaagagaaattttgtttttcaggcttgtggttgtaaagactctggtgattgtagctctaatgataattgtgtt |
4187 |
T |
|
| Q |
268 |
ttaccattcgagaggttagaattttgtgacactattgatcaaaagctgaagtttgtatgtataaggggatttagagggaaagagaaagaagtggaatttg |
367 |
Q |
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| T |
4186 |
ttaccattcgagaggttagaattgtgtgacactattgatcaaaagctgaagtttgtatgtataaggggatttagaggcaaagagaaagaagtgcaatttg |
4087 |
T |
|
| Q |
368 |
caaaatatctcataacaagagccaccatgatgaagaagattactataatttgtaatgattcaacagaggttgctgaaaacctgttgtcattaccaagagc |
467 |
Q |
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| T |
4086 |
caaaatatctcataacaagagccaccatgatgaagacgattactataatttgcaatgatttaacagaagttggtgcaaacctgttatcagtaccaagagc |
3987 |
T |
|
| Q |
468 |
ttctggtgatctttggatcaatttgaagctcaatgaaaataataatatgttacctagaagaccgacgaactgttggaggagagataaaattttgaaggtg |
567 |
Q |
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| T |
3986 |
ttttggtgatctttgcatcaatttgaagctcaatgcaaataataatatgtgacttagaaga-cgacgaactgttggaggagagataaaatcttgaaagtg |
3888 |
T |
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| Q |
568 |
cttaactgaagaccgtggagaaatggatgg-gatgctacctataacaacactcgggacgctcaagtcagcatgtaaatagaggagaggttcccggttaaa |
666 |
Q |
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| T |
3887 |
tttaaccgaagaccgtggagaaatggagggaggtgctacctataacaacactc-caacactcaagtcagtatgtaaatagaagggaggct-cgggttaga |
3790 |
T |
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| Q |
667 |
agagagatacccttgtgagggggtgatgttatctttatataggccaa |
713 |
Q |
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| T |
3789 |
agagagata-ccttgtgaggtcttgctgttagctttatataggccaa |
3744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 175
Target Start/End: Complemental strand, 4537 - 4370
Alignment:
| Q |
8 |
acaagttctagatataactctaccggtatgttttaatgtcatatactttgagggaaattcttaaaccttttattttccttctgnnnnnnntatagaaaat |
107 |
Q |
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| T |
4537 |
acaagttctagatataactctaccggtatgttataatttcatatactttgagtgaaattcttaagcctttttttttc-ttctgaaaaaaatatagaaaat |
4439 |
T |
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| Q |
108 |
aaaag-ttttttcatctgaaaattgtcgtggatttataaaacaaggcaacataattattctaatgttta |
175 |
Q |
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| T |
4438 |
aaaatattttttcatctgaaaattgtcgtgcaattataaaacaagccaacataattattctaattttta |
4370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 8e-54; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 8e-54
Query Start/End: Original strand, 168 - 371
Target Start/End: Original strand, 17944752 - 17944955
Alignment:
| Q |
168 |
aatgtttaactattctagatgtaattgtaagagaaattttgtttttcagggttgtggttgtaaagactctggtgattgtagctctaatgataattgtgtt |
267 |
Q |
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|||||||||||||||||||| ||||||||| |||||||||| |||||||| |||||||| ||||| ||||| ||||||| ||||||||| |||| | |
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| T |
17944752 |
aatgtttaactattctagatataattgtaaaagaaattttgcttttcaggcgcatggttgtagagactatggtggatgtagctataatgataactgtgct |
17944851 |
T |
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| Q |
268 |
ttaccattcgagaggttagaattttgtgacactattgatcaaaagctgaagtttgtatgtataaggggatttagagggaaagagaaagaagtggaatttg |
367 |
Q |
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||||||||||||||| ||||||| || |||| |||||||| |||||||||||||| ||| ||||||||||||||||| |||||| |||||||| |||||| |
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| T |
17944852 |
ttaccattcgagaggatagaattgtgagacagtattgatctaaagctgaagtttgcatgcataaggggatttagaggcaaagagcaagaagtgcaatttg |
17944951 |
T |
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| Q |
368 |
caaa |
371 |
Q |
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|||| |
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| T |
17944952 |
caaa |
17944955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1819 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold1819
Description:
Target: scaffold1819; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 353 - 477
Target Start/End: Original strand, 1206 - 1330
Alignment:
| Q |
353 |
aagaagtggaatttgcaaaatatctcataacaagagccaccatgatgaagaagattactataatttgtaatgattcaacagaggttgctgaaaacctgtt |
452 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | ||||||||| |||| |
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| T |
1206 |
aagaagtgatatttgcaaaatatctcataacaagagccaccatgatgaagagggttactataatttgtaatgattcaatagaagcagctgaaaacttgtt |
1305 |
T |
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| Q |
453 |
gtcattaccaagagcttctggtgat |
477 |
Q |
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|||| |||||| |||||| |||||| |
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| T |
1306 |
gtcagtaccaaaagcttccggtgat |
1330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 77; Significance: 3e-35; HSPs: 1)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 353 - 477
Target Start/End: Original strand, 2728 - 2852
Alignment:
| Q |
353 |
aagaagtggaatttgcaaaatatctcataacaagagccaccatgatgaagaagattactataatttgtaatgattcaacagaggttgctgaaaacctgtt |
452 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||| | ||||||||| |||| |
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| T |
2728 |
aagaagtgatatttgcaaaatatctcataacaagagccaccatgatgaagagggttactataatttgtaatgattcaatagaagcagctgaaaacttgtt |
2827 |
T |
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| Q |
453 |
gtcattaccaagagcttctggtgat |
477 |
Q |
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|||| |||||| |||||| |||||| |
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| T |
2828 |
gtcagtaccaaaagcttccggtgat |
2852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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