View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-8 (Length: 707)
Name: NF4464-Insertion-8
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-8 |
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| [»] chr7 (5 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0009 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 652; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 652; E-Value: 0
Query Start/End: Original strand, 8 - 707
Target Start/End: Original strand, 10281124 - 10281822
Alignment:
| Q |
8 |
atttctataatcaagctagtagtgagtgtctattattgtttgaagaatcaaagcaaaacaccnnnnnnnnncgtaaaacagaaataaactaagagtttta |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10281124 |
atttctataatcaagctagtagtgagtgtctattattgtttgaagaatcaaagcaaaacaccaaaaaaaa-cgtaaaacagaaataaactaagagtttta |
10281222 |
T |
|
| Q |
108 |
ctctttggagaatcaaagcaaaattaatcaagaaattaaatttctattggagaggaacaattttatgaacacaaaattaatcaaagcacaattgtgaaga |
207 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10281223 |
ctctttggagaatcaaagcaaaattaatcaagatattaaatttctattggagaggaacaattttatgaacacaaaattaatcaaagcacaattgtgaaga |
10281322 |
T |
|
| Q |
208 |
ataaataagataaggccttaactaattaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaatcaaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10281323 |
ataaataagataaggccttaactaattaattaatcaaggaaatcacaatgaaaatataacattgaatattgtttaatatgtgataaatggttcaatcaaa |
10281422 |
T |
|
| Q |
308 |
accaattttaatagtaattgtgctaaccaatcaagatattcatatattgctccaagtgtatcaaccttagtatggacaggaaccacgttcatatataacc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
10281423 |
accaattttaatagtaattgtgctaaccaatcaagatattcatatattgctccaagtgtatcaaccttagcatggacaggaaccacgttcatatataacc |
10281522 |
T |
|
| Q |
408 |
caaacatggttcttaatcaaagcaaatgcaaatccaccgtagttagcattcatattagcgtataacatatgccccaaaggctgattcaagctcagtaaat |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10281523 |
caaacatggttcttaatcaaagcaaatgcaaatccaccgtagttagcattcatattagcgtataacatatgccccaaaggctgattcaagctcagtaaat |
10281622 |
T |
|
| Q |
508 |
tgagcttgctttctatttcttgagcgttattagagagcattctaaaaggcagtgtcattagatattaagatcatgtttggagaaacaatttaattaaaca |
607 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
10281623 |
tgagcttgctttctatttcttgagcgttattagagagcattctaaaaggcagtgtcattagatattaagatcatgtttggataaacaatttaattaaaca |
10281722 |
T |
|
| Q |
608 |
aaatagcacatgcgtttatcatgtcctatgagaaacacattgaactcctagaattgttactcttttgtcattttgcatcagaggagtgttcctgtctcca |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10281723 |
aaatagcacatgcgtttatcatgtcctatgagaaacacattgaactcctagaattgttactcttttgtcattttgcatcagaggagtgttcctgtctcca |
10281822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 10266728 - 10266839
Alignment:
| Q |
80 |
gtaaaacagaaataaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaattaaatttctattggagaggaacaattttatgaacac |
179 |
Q |
| |
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|||||||| |||||||| ||||||||||| |||| ||||||||||| ||||||||||||| ||||||||| ||||||||||||| || ||||||| |
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| T |
10266728 |
gtaaaacataaataaacgaagagttttacactttcgagaatcaaagaaaaattaatcaag-----aaatttctaatggagaggaacaa--ttgtgaacac |
10266820 |
T |
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| Q |
180 |
aaaattaatcaaagcacaa |
198 |
Q |
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||||| ||||||||||||| |
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| T |
10266821 |
aaaatgaatcaaagcacaa |
10266839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 48014333 - 48014366
Alignment:
| Q |
91 |
ataaactaagagttttactctttggagaatcaaa |
124 |
Q |
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||||| |||||||||||||||||||||||||||| |
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| T |
48014333 |
ataaattaagagttttactctttggagaatcaaa |
48014366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 621 - 661
Target Start/End: Complemental strand, 47544209 - 47544169
Alignment:
| Q |
621 |
gtttatcatgtcctatgagaaacacattgaactcctagaat |
661 |
Q |
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|||||||||||| |||| |||||| |||||||||||||||| |
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| T |
47544209 |
gtttatcatgtcgtatgtgaaacatattgaactcctagaat |
47544169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 48014451 - 48014499
Alignment:
| Q |
236 |
attaatcaaggaaatcacaatggaaatataacattgaatattgtttaat |
284 |
Q |
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|||||||||| |||||||||| ||||||| ||||||||||||||||| |
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| T |
48014451 |
attaatcaagaaaatcacaatcgaaatattttattgaatattgtttaat |
48014499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 173 - 313
Target Start/End: Original strand, 13537 - 13672
Alignment:
| Q |
173 |
tgaacacaaaattaatcaaagcacaattgtgaagaataaataagataaggccttaactaattaattaatcaaggaaatcacaatggaaatataacattga |
272 |
Q |
| |
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||||||||||||||||||||||| | ||||||| |||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||| |
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| T |
13537 |
tgaacacaaaattaatcaaagcata-ttgtgaacaataaataagataaggtcttaactaat----taatcaaggaaattacaacggaaatataacattga |
13631 |
T |
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| Q |
273 |
atattgtttaatatgtgataaatggttcaatcaaaaccaat |
313 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |
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| T |
13632 |
atattgattaatatgtgataaatggttcaatcaaaaccaat |
13672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 69; Significance: 1e-30; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 233 - 305
Target Start/End: Complemental strand, 101806 - 101734
Alignment:
| Q |
233 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaatca |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
101806 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaattgttcaatca |
101734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 346 - 462
Target Start/End: Complemental strand, 101710 - 101598
Alignment:
| Q |
346 |
ttcatatattgctccaagtgtatcaaccttagtatggacaggaaccacgttcatatataacccaaacatggttcttaatcaaagcaaatgcaaatccacc |
445 |
Q |
| |
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|||||||||||||| ||| |||||||||||| | |||| |||||||||||||| ||||||||| | ||||||||||||||| ||||||||||||| |
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| T |
101710 |
ttcatatattgctcgaagagtatcaaccttaacctcgacaagaaccacgttcata----acccaaacaggattcttaatcaaagcagatgcaaatccacc |
101615 |
T |
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| Q |
446 |
gtagttagcattcatat |
462 |
Q |
| |
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||| |||||||||||| |
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| T |
101614 |
atagctagcattcatat |
101598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 346 - 462
Target Start/End: Original strand, 45784927 - 45785039
Alignment:
| Q |
346 |
ttcatatattgctccaagtgtatcaaccttagtatggacaggaaccacgttcatatataacccaaacatggttcttaatcaaagcaaatgcaaatccacc |
445 |
Q |
| |
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|||||||||||| ||||| || |||||||||| |||||||||||||| |||||| ||||||||| | ||||||| |||||| ||||||||||||| |
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| T |
45784927 |
ttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcata----acccaaacaggattcttaactaaagcagatgcaaatccacc |
45785022 |
T |
|
| Q |
446 |
gtagttagcattcatat |
462 |
Q |
| |
|
||||||||||||||| |
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| T |
45785023 |
caagttagcattcatat |
45785039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Complemental strand, 22857169 - 22857109
Alignment:
| Q |
84 |
aacagaaataaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaatt |
144 |
Q |
| |
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|||| ||||||||||| |||||||||||||||||||| | || ||||| |||||||||||| |
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|
| T |
22857169 |
aacataaataaactaatagttttactctttggagaattagagaaaaatcaatcaagaaatt |
22857109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 92 - 144
Target Start/End: Complemental strand, 24889036 - 24888984
Alignment:
| Q |
92 |
taaactaagagttttactctttggagaatcaaagcaaaattaatcaagaaatt |
144 |
Q |
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|||||||| |||| ||||||||||||||| |||| |||| |||||||||||| |
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| T |
24889036 |
taaactaatagttctactctttggagaattaaagataaatcaatcaagaaatt |
24888984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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