View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464-Insertion-9 (Length: 684)
Name: NF4464-Insertion-9
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464-Insertion-9 |
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Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 321 - 658
Target Start/End: Original strand, 7458240 - 7458577
Alignment:
| Q |
321 |
tgttaagaggtgttggatgacacagattgcagttagaggacggttcatgttgcttagttctgctgtttgtgtgcatgggagaggggtgcacagaattcca |
420 |
Q |
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| T |
7458240 |
tgttaagaggtgttggatgacacagattgcagttagaggacggttcatgttgcttagttctgctgtttgtgtgcatgggagaggggtgcacacaattcca |
7458339 |
T |
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| Q |
421 |
aataaacataatgccaagnnnnnnnnnnnnnnnncctatttggaatatttatagggttgaacctagtatgagtatatatgctaatgctactggtcccgat |
520 |
Q |
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| T |
7458340 |
aataaacataatgccaagtttttctttttcttttcctatttggaatatttatagggttgaaccaagtatgagtatatatgctaatgctactggtcccgat |
7458439 |
T |
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| Q |
521 |
tcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacctttgnnnnnnnattgcaggaagtaatataactcaaata |
620 |
Q |
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| T |
7458440 |
tcattggttggctttaaaagattgacagcaattaagtaaagtcaacaaacaacagcataacttttgtttttttattgcaggaagtaatataactcaaata |
7458539 |
T |
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| Q |
621 |
cagtgcacatgacaccaaaaacgaaaccctacctaata |
658 |
Q |
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| T |
7458540 |
cagtgcacataacaccaaaaacgaatccctaccaaata |
7458577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 7 - 277
Target Start/End: Original strand, 7457943 - 7458214
Alignment:
| Q |
7 |
aaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctagtagtaccatgcnnnnnnnnnncttccaatttttgtggcaaattaattga |
106 |
Q |
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| T |
7457943 |
aaaagatgtctctcgttggttagggatagggagtgagaaaatatcacctagtagtaccatgctttttttt--cttccaatttttgtggccaattaattga |
7458040 |
T |
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| Q |
107 |
ttccacgttcttaccattaatcaatcaaa---ctcaagacattagctagagagaactttttagaaggacagacaaattaaaagtggtaacactttatttc |
203 |
Q |
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| T |
7458041 |
ttccacgttcttaccattaatcaatcaaataactcaagacattagctagagagaactttttagaaggacagacaaattaaaagtggtaacactttatttc |
7458140 |
T |
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| Q |
204 |
tttcatgtccaagattgaactggatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
277 |
Q |
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| T |
7458141 |
tttcatgtccaagattgaactggatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
7458214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 9e-41
Query Start/End: Original strand, 119 - 277
Target Start/End: Original strand, 7443761 - 7443926
Alignment:
| Q |
119 |
accattaatcaatcaaactcaagacattagctagagagaacttttt----ag-aaggacagacaaattaaaagtggtaacactttatttctttcatgtcc |
213 |
Q |
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| T |
7443761 |
accattaatcaatcaagtccaaaacattagatagagagaaccttttgtttagtaaggacagacaaattaaaagtggtcaaactttatttctttcttgtcc |
7443860 |
T |
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| Q |
214 |
aagat--tgaactggatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
277 |
Q |
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| T |
7443861 |
aggatattgaactgaatattcctcaatagattgactagattaatgccacgtttgatctatttttat |
7443926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 7443970 - 7444035
Alignment:
| Q |
331 |
tgttggatgacacagatt-gcagttagaggacggttcatgttgcttagttctgctgtttgtgtgca |
395 |
Q |
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| T |
7443970 |
tgttggatgacacagatttgcagttagaggacggtccatgttacttggtgctgctgtgtgtgtgca |
7444035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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