View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_high_1 (Length: 779)
Name: NF4464_high_1
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 15 - 762
Target Start/End: Complemental strand, 2484438 - 2483706
Alignment:
| Q |
15 |
cagagagggacaatcaatcagaaaaactaatgaaggagaaactagttaaacaaagaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
114 |
Q |
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|||||||||||||||||| |||||||||||||| |||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484438 |
cagagagggacaatcaatgagaaaaactaatgagggagaaaccaattaaacaaacaaacaaatcaaaagagagaacgaatcaaatagagggaagtgaagt |
2484339 |
T |
|
| Q |
115 |
gcaatcataaaggggagatatgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaaccaaatgaacca |
214 |
Q |
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| T |
2484338 |
gcaatcataaaggggagatgtgcagtcaaacagaaaggaagaaaccaaagagagaaagacaatcaaagtgagaagtcaacataccaaacc---------- |
2484249 |
T |
|
| Q |
215 |
aaccgaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2484248 |
----gaattcaaagtacaaccagaataaccaaccttaatcaaaccaccatttaccaaatcttccttgacagccccatcaataatatcaatatcaattcat |
2484153 |
T |
|
| Q |
315 |
tttgcattcgaactaaatatacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatattttttcttattaccaa |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| |
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| T |
2484152 |
tttgcattcgaactaaatatacaatttatcaccaaattgcatcacaaccacaccaaacaagcctttctgagtggatcgtaatattttttcttattaccaa |
2484053 |
T |
|
| Q |
415 |
accgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttc |
514 |
Q |
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| T |
2484052 |
accgcctctcaattaatccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttc |
2483953 |
T |
|
| Q |
515 |
tcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgcaaacacaagatatgccacttgctgcacatgaagaaactcaataatcaat |
614 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483952 |
tcaatccaaatgttgcaagcggtgcctattttaagaagaaaccaaaattgc-aattcaagatatgccacttgctgcacatgaagaaactcaataatcaag |
2483854 |
T |
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| Q |
615 |
ttgtaatgcctctgaatatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaac |
714 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2483853 |
ttgtaatgcctctgaagatttttaacaaactaagaaaaccaaaataacaaattaagaaaaccaaatcactatcaatataacgaatattcaaaagacaaac |
2483754 |
T |
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| Q |
715 |
ctaaaacaatcccaaacttttggaattcgacggcagaagcgattagtg |
762 |
Q |
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| T |
2483753 |
caaaaacaatcccaaacttttggaattcgacggcagaagcgattagtg |
2483706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 651 - 762
Target Start/End: Complemental strand, 2479359 - 2479244
Alignment:
| Q |
651 |
aaccaaaataacaaattaagaaaaccaaatcactatcaatata----acgaatattcaaaagacaaacctaaaacaatcccaaacttttggaattcgacg |
746 |
Q |
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|||||| ||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
2479359 |
aaccaacataacaaatcaagagaactaaatcactatcaatatatataacgaatattcaaaagacaaaccaaaaacaatcccaagcttttggaattcgacg |
2479260 |
T |
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| Q |
747 |
gcagaagcgattagtg |
762 |
Q |
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| ||| ||||||||| |
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| T |
2479259 |
gtggaaacgattagtg |
2479244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 6e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 333 - 543
Target Start/End: Original strand, 17927413 - 17927621
Alignment:
| Q |
333 |
atacaatttatcaccaaattgcatcacaaccacaccaaacaaaccattctgagtggatcgcaatatttt-ttcttattaccaaaccgcctctcaattaat |
431 |
Q |
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||||||||||||| ||||| ||| |||||| ||||||| |||| | |||||||||| | |||||| ||||||||||| | | |||||| ||||||| |
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| T |
17927413 |
atacaatttatcataaaatttcataacaaccgcaccaaataaacaaaattgagtggatctccctatttttttcttattaccgatctgcctcttaattaat |
17927512 |
T |
|
| Q |
432 |
ccaataacttcaaatgcaattgtggtagcaaattccaaattgtatactcaatcaaactctttttatttaaaacgacaactttctcaatccaaatgttgca |
531 |
Q |
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|||||||||||||| ||| | ||||||||||||||||||||||||||| ||| ||||| |||| ||| |||||||| ||||||||||| ||||||||| |
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| T |
17927513 |
ccaataacttcaaacacaactatggtagcaaattccaaattgtatactcgatccaactcctttttttt--aacgacaattttctcaatcc-aatgttgca |
17927609 |
T |
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| Q |
532 |
agcggtgcctat |
543 |
Q |
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|| |||| |||| |
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| T |
17927610 |
agtggtgtctat |
17927621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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