View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_high_13 (Length: 355)

Name: NF4464_high_13
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_high_13
NF4464_high_13
[»] chr4 (2 HSPs)
chr4 (182-340)||(30519341-30519495)
chr4 (12-100)||(30519174-30519262)
[»] chr2 (1 HSPs)
chr2 (16-94)||(38897072-38897153)


Alignment Details
Target: chr4 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 182 - 340
Target Start/End: Original strand, 30519341 - 30519495
Alignment:
Q  182 actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttatatatgtttgtatactatttctatttctattttggta 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  30519341 actaaatagtaaggaactacactatacatatatatgtctttcaaatgtatacattgcagcttat----gtttgtatactatttctatttctattttggta 30519436  T
Q  282 aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttg 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30519437 aggtgtcttcaatcttttatcttacttcctagatttttgtttcacagcagttttctttg 30519495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 12 - 100
Target Start/End: Original strand, 30519174 - 30519262
Alignment:
Q  12 agaagcaaaggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30519174 agaagcaaaggtgtatgatgacacatatgatgaggttggaagaaagttgatctccatttggaatgattatcccataatttgttcttgct 30519262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 38897072 - 38897153
Alignment:
Q  16 gcaaaggtgtatgatgacacatatgatgaggtt----ggaagaaagttgatctccatttggaatgattatcccataatttgtt 94  Q
    |||||||||||||||||||||||||||||||||    | ||||||||||   ||||||||||||||||||| |||||||||||    
T  38897072 gcaaaggtgtatgatgacacatatgatgaggttgatagcaagaaagttg-catccatttggaatgattatctcataatttgtt 38897153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University