View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_high_16 (Length: 323)

Name: NF4464_high_16
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_high_16
NF4464_high_16
[»] chr3 (2 HSPs)
chr3 (30-244)||(53134593-53134796)
chr3 (262-304)||(53134535-53134577)
[»] chr6 (3 HSPs)
chr6 (192-227)||(8110086-8110121)
chr6 (187-221)||(3607085-3607119)
chr6 (187-243)||(2146729-2146785)
[»] chr4 (3 HSPs)
chr4 (190-227)||(42096829-42096866)
chr4 (189-221)||(959083-959115)
chr4 (189-221)||(43635736-43635768)
[»] chr7 (1 HSPs)
chr7 (190-223)||(31756774-31756807)
[»] chr2 (1 HSPs)
chr2 (189-234)||(33833472-33833517)
[»] scaffold0254 (1 HSPs)
scaffold0254 (187-243)||(23190-23246)
[»] chr5 (3 HSPs)
chr5 (189-221)||(15398389-15398421)
chr5 (189-221)||(32827109-32827141)
chr5 (187-243)||(37442620-37442676)


Alignment Details
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 30 - 244
Target Start/End: Complemental strand, 53134796 - 53134593
Alignment:
Q  30 cacagatgaaaacagaacgtgcggcacaaagtgacaagtgagttgagatgagaggcattcgtttatgtttttataatggacataaggcaaaccctaaact 129  Q
    ||||||||||||||||||||||||||||||||||||||||||          ||||||||||||| ||||| ||||||||| ||||||||||||||| ||    
T  53134796 cacagatgaaaacagaacgtgcggcacaaagtgacaagtgag----------aggcattcgtttaggtttt-ataatggacttaaggcaaaccctaagct 53134708  T
Q  130 tacacttacaaatacgtcatttgggcttccactgctttgggtcagtaaaataagtccggtaattgctattctcccatctatttttgctcattcctatcaa 229  Q
    | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||    
T  53134707 tgcacttacaaatacggcatttgggcttccactgctttgggtcagtaaaataagtccggtaatcgctattctcctatctatttttgctcattcctgccaa 53134608  T
Q  230 atagctgaacgtgac 244  Q
    |||||||||||||||    
T  53134607 atagctgaacgtgac 53134593  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 53134577 - 53134535
Alignment:
Q  262 gaaagaagtcgaatgtgacttaactcacttaaaagtttgtttg 304  Q
    |||||||| |||| || ||||||||||||||||||||||||||    
T  53134577 gaaagaagccgaacgtaacttaactcacttaaaagtttgtttg 53134535  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 8110086 - 8110121
Alignment:
Q  192 ttgctattctcccatctatttttgctcattcctatc 227  Q
    ||||||||||||||||||||||||||||||||||||    
T  8110086 ttgctattctcccatctatttttgctcattcctatc 8110121  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 221
Target Start/End: Complemental strand, 3607119 - 3607085
Alignment:
Q  187 ggtaattgctattctcccatctatttttgctcatt 221  Q
    |||||||||| ||||||||||||||||||||||||    
T  3607119 ggtaattgctcttctcccatctatttttgctcatt 3607085  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 2146729 - 2146785
Alignment:
Q  187 ggtaattgctattctcccatctatttttgctcattcctatcaaatagctgaacgtga 243  Q
    |||||||||| |||||||||||||||||||| ||| |  ||||||||| || |||||    
T  2146729 ggtaattgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtga 2146785  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 227
Target Start/End: Complemental strand, 42096866 - 42096829
Alignment:
Q  190 aattgctattctcccatctatttttgctcattcctatc 227  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  42096866 aattgctcttctcccatctatttttgctcattcctatc 42096829  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 959083 - 959115
Alignment:
Q  189 taattgctattctcccatctatttttgctcatt 221  Q
    |||||||| ||||||||||||||||||||||||    
T  959083 taattgctcttctcccatctatttttgctcatt 959115  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 43635736 - 43635768
Alignment:
Q  189 taattgctattctcccatctatttttgctcatt 221  Q
    |||||||| ||||||||||||||||||||||||    
T  43635736 taattgctcttctcccatctatttttgctcatt 43635768  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 190 - 223
Target Start/End: Original strand, 31756774 - 31756807
Alignment:
Q  190 aattgctattctcccatctatttttgctcattcc 223  Q
    ||||||| ||||||||||||||||||||||||||    
T  31756774 aattgctcttctcccatctatttttgctcattcc 31756807  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 33833517 - 33833472
Alignment:
Q  189 taattgctattctcccatctatttttgctcattcctatcaaatagc 234  Q
    |||||||| ||||||||||| ||||| ||||||||| |||||||||    
T  33833517 taattgctcttctcccatctgtttttactcattcctgtcaaatagc 33833472  T

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Target: scaffold0254 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Original strand, 23190 - 23246
Alignment:
Q  187 ggtaattgctattctcccatctatttttgctcattcctatcaaatagctgaacgtga 243  Q
    |||||||||| |||||||||||||||||||| ||| |  ||||||||| || |||||    
T  23190 ggtaattgctcttctcccatctatttttgcttatttccgtcaaatagcagagcgtga 23246  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 15398421 - 15398389
Alignment:
Q  189 taattgctattctcccatctatttttgctcatt 221  Q
    |||||||| ||||||||||||||||||||||||    
T  15398421 taattgctcttctcccatctatttttgctcatt 15398389  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Complemental strand, 32827141 - 32827109
Alignment:
Q  189 taattgctattctcccatctatttttgctcatt 221  Q
    ||||||||||||||| |||||||||||||||||    
T  32827141 taattgctattctcctatctatttttgctcatt 32827109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 37442676 - 37442620
Alignment:
Q  187 ggtaattgctattctcccatctatttttgctcattcctatcaaatagctgaacgtga 243  Q
    |||||||||| |||| |||||| ||||||||||||||  ||||||||| || |||||    
T  37442676 ggtaattgctcttcttccatctgtttttgctcattcccgtcaaatagccgagcgtga 37442620  T

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