View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464_high_22 (Length: 276)
Name: NF4464_high_22
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Original strand, 7952419 - 7952678
Alignment:
| Q |
1 |
ttcgcattaatattgataataatatatatgacaaaccggtgctacaattaaatacatttaattaatctcaaattctcaattgaccaatccacccatgaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7952419 |
ttcgcattaatattgataataatatatatgacaaaccggtgctacaattaaatacatttaatcaatctcaaattctcaattgaccaatccatccatgaga |
7952518 |
T |
|
| Q |
101 |
aagcaaaacaattgaagtcagttatagctatctagctttgtcagcaaaacatgatcaaattcatgatcaacatgcaccacaattgtagaactcaaccagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952519 |
aagcaaaacaattgaagtcagttatagctatctagctttgtcagcaaaacatgatcaaattcatgatcaacatgcaccacaattgtagaactcaaccagc |
7952618 |
T |
|
| Q |
201 |
tcagccatggaccccaattgtgtctcaccttcaacactctcaagcatccacaacaaatgt |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7952619 |
tcagccatggaccccaattgtgtctcaccttcaacactctcaagcatccacaacaaatgt |
7952678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 104 - 260
Target Start/End: Original strand, 7936585 - 7936744
Alignment:
| Q |
104 |
caaaacaattgaagtcagt---tatagctatctagctttgtcagcaaaacatgatcaaattcatgatcaacatgcaccacaattgtagaactcaaccagc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||| || | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7936585 |
caaaacaattgaagtcagtcactatagctatcaagttgtattagcaaaacatgatcaaattcatgatcaacatgcaccacaattgtagaactcaaccagc |
7936684 |
T |
|
| Q |
201 |
tcagccatggaccccaattgtgtctcaccttcaacactctcaagcatccacaacaaatgt |
260 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
7936685 |
tcagccatggaccccaactgtgtctcaccttcaacactttcaagcatccacagcaaatgt |
7936744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University