View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464_high_27 (Length: 257)
Name: NF4464_high_27
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_27 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 16 - 188
Target Start/End: Original strand, 47422975 - 47423146
Alignment:
| Q |
16 |
aaagaaaaagaagtctagcaaatgattataacaaaaggataattttactcatttatatcta-ctgtatatgttattttaggatataataatttcgagtag |
114 |
Q |
| |
|
|||||||| | | ||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422975 |
aaagaaaaggtaatctagcaaatgcttataacaaaag-ataattttactcatttatatctaactgtatatgttattttaggatataataatttcgagtag |
47423073 |
T |
|
| Q |
115 |
aattaattctgcaacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgcgtagtaacataaa |
188 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47423074 |
aattaattctgcaacctctaaaatca-ttttgattctctaaaattgaaaccaaacatatgcgtagtaacataaa |
47423146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 47423442 - 47423505
Alignment:
| Q |
180 |
taacataaaataaaagatatgagagggagaaatataagagaaacgcgctaattcttgtgaatac |
243 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47423442 |
taacataaaataaaagatatgagagggagaaatataagagaaacgcgctaattcttgtgaatac |
47423505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 49829200 - 49829249
Alignment:
| Q |
126 |
caacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
||||||||| |||||||||||| |||||| ||||||||||||||| |||| |
|
|
| T |
49829200 |
caacctctagaatcacttttgaccctctagaattgaaaccaaacacatgc |
49829249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 32111934 - 32111891
Alignment:
| Q |
127 |
aacctctaaaatcacttttgatcctctaaaattgaaaccaaaca |
170 |
Q |
| |
|
|||||| | ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
32111934 |
aacctcaagaatcacttttgatcctctagaattgaaaccaaaca |
32111891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 46870366 - 46870312
Alignment:
| Q |
119 |
aattctgcaacctctaaaatcacttttgatcctctaaaattgaaaccaaacatat |
173 |
Q |
| |
|
|||||| |||| |||| |||||||||||| |||| |||||||||| ||||||||| |
|
|
| T |
46870366 |
aattctacaacatctataatcacttttgaccctccaaaattgaaatcaaacatat |
46870312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 131 - 175
Target Start/End: Original strand, 1872373 - 1872417
Alignment:
| Q |
131 |
tctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1872373 |
tctaaaatcacttttgatcctccaaaattgtaaccaaacatatgc |
1872417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 27881293 - 27881249
Alignment:
| Q |
129 |
cctctaaaatcacttttgatcctctaaaattgaaaccaaacatat |
173 |
Q |
| |
|
||||||||||||||||||| |||| |||||| ||||||||||||| |
|
|
| T |
27881293 |
cctctaaaatcacttttgaccctcaaaaatttaaaccaaacatat |
27881249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 167
Target Start/End: Complemental strand, 38453316 - 38453268
Alignment:
| Q |
119 |
aattctgcaacctctaaaatcacttttgatcctctaaaattgaaaccaa |
167 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
38453316 |
aattctacaacctctagaattacttttgatcctctagaattgaaaccaa |
38453268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 175
Target Start/End: Original strand, 45776876 - 45776923
Alignment:
| Q |
128 |
acctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
|||| ||||||||||||||| || | |||||||||||||||||||||| |
|
|
| T |
45776876 |
acctttaaaatcacttttgacccaccaaaattgaaaccaaacatatgc |
45776923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 2256528 - 2256584
Alignment:
| Q |
119 |
aattctgcaacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
|||||| |||||| ||||||| ||||||| |||| | |||||| ||||||||||||| |
|
|
| T |
2256528 |
aattctacaacctttaaaatcgcttttgaccctccataattgataccaaacatatgc |
2256584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 175
Target Start/End: Complemental strand, 11302344 - 11302288
Alignment:
| Q |
119 |
aattctgcaacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
|||||| |||| |||| ||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
11302344 |
aattctacaacttctagaatcaattttgactctccaaaattgaaaccaaacatatgc |
11302288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 170
Target Start/End: Complemental strand, 3551568 - 3551529
Alignment:
| Q |
131 |
tctaaaatcacttttgatcctctaaaattgaaaccaaaca |
170 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3551568 |
tctagaatcactttagatcctctaaaattgaaaccaaaca |
3551529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 30220354 - 30220403
Alignment:
| Q |
126 |
caacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
30220354 |
caacctctagaatcacttttgactctctaaaattgaaatcaaacacatgc |
30220403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 175
Target Start/End: Original strand, 47978558 - 47978607
Alignment:
| Q |
126 |
caacctctaaaatcacttttgatcctctaaaattgaaaccaaacatatgc |
175 |
Q |
| |
|
|||| |||| |||||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
47978558 |
caacttctagaatcacttttgaccctccaaaattgaaaacaaacatatgc |
47978607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University