View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_high_31 (Length: 251)
Name: NF4464_high_31
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_31 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 17 - 241
Target Start/End: Complemental strand, 23828242 - 23828018
Alignment:
| Q |
17 |
aataattgcatactgcgtaaaatagcagtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgtatcacattataatagc |
116 |
Q |
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| T |
23828242 |
aataattgcatactgcggaaaatagcggtttagtcaaattttgttacactaaatgttatagcaccactttgtactaaatagtgtatcacataataatagc |
23828143 |
T |
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| Q |
117 |
gatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacaccgcaacagttacactattttcttcttagttataagagttaaact |
216 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23828142 |
gatttattcaaattcagctatgctattgcgccgctatagcatctatttgacaacagcgcaacagttacactattttcttcttagttataagagttaaact |
23828043 |
T |
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| Q |
217 |
taccatgaactcgttgtgacctttg |
241 |
Q |
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||||||||||| ||||||||||||| |
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| T |
23828042 |
taccatgaacttgttgtgacctttg |
23828018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 23824223 - 23824163
Alignment:
| Q |
109 |
ataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaa |
169 |
Q |
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| T |
23824223 |
ataatagcaatttgttcaaattcagctaagctatagcgccactatagccgctatttgacaa |
23824163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 33342776 - 33342727
Alignment:
| Q |
82 |
actttgtactaaatagtgtatcacattataatagcgatttattcaaattc |
131 |
Q |
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| T |
33342776 |
actttgtacttaatagtgtatcgcataacaatagcgatttattcaaattc |
33342727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 507809 - 507723
Alignment:
| Q |
86 |
tgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctattgcgccgctatagcatctatttgacaacac |
172 |
Q |
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|||||||||| ||||||||||| | |||||| |||||| ||||| ||||||||| ||||| ||| | || |||||||||||||| |
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| T |
507809 |
tgtactaaattgtgtatcacataacaatagcagtttattataattccgctatgctatagcgccactaaatcaactatttgacaacac |
507723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 7180716 - 7180761
Alignment:
| Q |
82 |
actttgtactaaatagtgtatcacattataatagcgatttattcaa |
127 |
Q |
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| T |
7180716 |
actttgtactaaatagtgtatcacagaacaatagcaatttattcaa |
7180761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 142
Target Start/End: Original strand, 25314042 - 25314103
Alignment:
| Q |
81 |
cactttgtactaaatagtgtatcacattataatagcgatttattcaaattcaactatgctat |
142 |
Q |
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|||||||||| ||||||||||||||| | |||| |||||| ||||||||| ||||||||| |
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| T |
25314042 |
cactttgtaccaaatagtgtatcacagaacaataacgatttgttcaaattcctctatgctat |
25314103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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