View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464_high_33 (Length: 241)
Name: NF4464_high_33
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37398320 - 37398541
Alignment:
| Q |
1 |
tttagtttatgggaaaagtggtttggaccaatgttttaaaaactagacttaaccaattaattgaattgataatcattcagttcacggtttaataatgaat |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
37398320 |
tttagtttatgggaaaaatggtttggaccaatgttttaaaaactagacttaaccaattaattgaattggtaatcattcagttcacggtttaataatgact |
37398419 |
T |
|
| Q |
101 |
atgatagtaaatcgagaatcaactcgttggaagtatcaatagagtttctaatattttttaattttcaaaaataagaagaatgtaactatgtttgatatta |
200 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37398420 |
acgatagtaaatcgagaatcaacttgttggaagtatcaatagagtttctaatattttttatttttcaaaaataagaagaatgtaactatgtttgatatta |
37398519 |
T |
|
| Q |
201 |
tcaactgcaaatacattatatg |
222 |
Q |
| |
|
||||||||||||| |||||||| |
|
|
| T |
37398520 |
tcaactgcaaatatattatatg |
37398541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 37644524 - 37644433
Alignment:
| Q |
115 |
agaatcaactcgttggaagtatcaatagagtttctaatattttttaattttcaaaaataagaagaatgtaactatgtttgatattatcaactgcaaata |
213 |
Q |
| |
|
|||||||| ||||||||||||||||||| | |||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37644524 |
agaatcaattcgttggaagtatcaatag------ttatattttttattttt-aaaaataagaagaatgtaaatatgtttgatattatcaactgcaaata |
37644433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 115 - 210
Target Start/End: Original strand, 37388784 - 37388880
Alignment:
| Q |
115 |
agaatcaactcgttggaagtatcaatagagtttctaatattttttaatttt-caaaaataagaagaatgtaactatgtttgatattatcaactgcaa |
210 |
Q |
| |
|
|||||||| |||||||||||||||||||| ||| | |||||||||| |||| |||||||||||||||| || ||||| | |||||||||||||||| |
|
|
| T |
37388784 |
agaatcaattcgttggaagtatcaatagaattttttatattttttatttttaaaaaaataagaagaatgcaaatatgtgtcatattatcaactgcaa |
37388880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 37644580 - 37644535
Alignment:
| Q |
34 |
ttttaaaaactagacttaaccaattaattgaattgataatcattca |
79 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
37644580 |
ttttaaaaactagatttaaccaattaattgaattgattgtcattca |
37644535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 213
Target Start/End: Complemental strand, 14557187 - 14557130
Alignment:
| Q |
155 |
tttttaattttcaaaaataagaagaatgtaactatgtttgatattatcaactgcaaata |
213 |
Q |
| |
|
||||| ||||| ||||||||||||||||| | ||||||||||||||||||||||||||| |
|
|
| T |
14557187 |
ttttttatttttaaaaataagaagaatgtga-tatgtttgatattatcaactgcaaata |
14557130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University