View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_high_38 (Length: 238)
Name: NF4464_high_38
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_38 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 45287897 - 45288055
Alignment:
| Q |
13 |
attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattgaagaagcgacttataaatttac |
112 |
Q |
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| T |
45287897 |
attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattgaagaagcgacttataaatttac |
45287996 |
T |
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| Q |
113 |
agcgatatgaaacacaaaatcaattatacaattatgaataagaacaatacaattttggt |
171 |
Q |
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| T |
45287997 |
agtgatatgaaacacaaaatcaattatacaattatgaataagaacaatacaattttggt |
45288055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 45287631 - 45287708
Alignment:
| Q |
14 |
ttatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattga |
91 |
Q |
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| T |
45287631 |
ttatttattcagggccatgaatttatatctattttgcatattttcttcaatatttagttaactcaatcatataattga |
45287708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 31608898 - 31608742
Alignment:
| Q |
13 |
attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattgaagaagcgacttataaatttac |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31608898 |
attatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattgaagaagcgacttataaatttac |
31608799 |
T |
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| Q |
113 |
agcgatatgaaacacaaaatcaattatacaattatgaataagaacaatacaattttggt |
171 |
Q |
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| T |
31608798 |
agtgatatgaaacacaaaatcaattatacaattatgaataagaaca--acaattttggt |
31608742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 31609163 - 31609086
Alignment:
| Q |
14 |
ttatttaaacagggccatgaatttatattcattttgcatattttcttcaatatgtagttaactcaatcatataattga |
91 |
Q |
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||||||| ||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31609163 |
ttatttattcagggccatgaatttatatctatttttcatattttcttcaatatttagttaactcaatcatataattga |
31609086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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