View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_high_6 (Length: 473)
Name: NF4464_high_6
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 400; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 45316853 - 45316410
Alignment:
| Q |
19 |
tcataatatatatcttatatttaaatgccattctgtatcttcnnnnnnnnnnnnnnaagaaagtatgtcgttctgtattattttaaaaaagcattgagat |
118 |
Q |
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| T |
45316853 |
tcataatatatatcttatatttaaatgccattctgtatcttcttttttttttt---aagaaagtatgtcgttctgtattattttaaaaaagcattgagat |
45316757 |
T |
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| Q |
119 |
gtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtg |
218 |
Q |
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| T |
45316756 |
gtggttgaaaataaacttaaatcaaaaaatggtctttacatgtgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtg |
45316657 |
T |
|
| Q |
219 |
tctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggttatgat |
318 |
Q |
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| T |
45316656 |
tctggactcttctggcaagcacaacaagttttccatcacaaaggcgtaagcaatattcccgtgtattgtacatgttcgttttatggatcaaggttatgat |
45316557 |
T |
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| Q |
319 |
tagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgt |
418 |
Q |
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| T |
45316556 |
tagaatgtgtagtaatttatttggagatgcattgtggaactttgattgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgt |
45316457 |
T |
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| Q |
419 |
ttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
465 |
Q |
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| T |
45316456 |
ttgacgattttaaataacatgatcacgtatcacccggtacctatgct |
45316410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 457
Target Start/End: Complemental strand, 969051 - 968958
Alignment:
| Q |
364 |
ttgcagtgatacaggtagaaaagtggaagatccagagttgttagaggcaatccgtttgacgattttaaataacatgatcacgtatcacccggta |
457 |
Q |
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| T |
969051 |
ttgcagtgatactggcagaaaagtggaagatccagagttgttagaggcaattcgtttgacaattataaataatctgattcagtatcacccggta |
968958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 161 - 268
Target Start/End: Complemental strand, 969899 - 969792
Alignment:
| Q |
161 |
tgttgcagatgaatgcattgaaaaacttgggactgaatgttgttaaggcaagcgtgtgtctggactcttctggcaagcacaacaagttttccatcacaaa |
260 |
Q |
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| T |
969899 |
tgttgtagatgagagcattaaaagacttaggcctcaatgtcgtaaaggcaaatgtctttctcgattcttctggcaagcacaacaagttttccatcacaaa |
969800 |
T |
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| Q |
261 |
ggcgtaag |
268 |
Q |
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||||||| |
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| T |
969799 |
agcgtaag |
969792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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