View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_10 (Length: 400)
Name: NF4464_low_10
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 37259402 - 37259782
Alignment:
| Q |
16 |
catataacatatgttatatggattggcgttgattacaaagtgggtaggaggcaaaacaaaattaaagaatatgataaagtattaaatgggtccgatcttt |
115 |
Q |
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| T |
37259402 |
catataatatatgttatatggattggcgttgattacaaagtgggtaggaggcaaaagaaaattaaagaatatgataaagtactaaatgggtccgatcttt |
37259501 |
T |
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| Q |
116 |
agacaaatatgcttgacaatatatatagccatccatgattgtaggaattggtaataaggagaagtagagaacaagtcaaattggattaattagtggaatc |
215 |
Q |
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| T |
37259502 |
agacaaatatgcttgacaatatatatagccatccatgattgtaggaattagtaataaggagaagtagagaacaagtaaaattggattaattagtggaatc |
37259601 |
T |
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| Q |
216 |
aattactattatggattataccttttttggtgcattcaaattaaagaaagaaatcatatcgtaaaaataataataataagatatatgagccgtcccacgt |
315 |
Q |
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| T |
37259602 |
aattactattatggattatacctcttttggtgcattcaaattaaagaaagaaatcatatcgtaaaaataataataataag--atatgagccgtcccacgt |
37259699 |
T |
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| Q |
316 |
aaataaaatatgaaaggccttgtg-----tgtgttaataaagggtttgacgacaatataaaatttcaattgcattccagaata |
393 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37259700 |
aaataaaatatgaaaggccttgtgtgtgttgtgttaataaagggtttgacgacaatataaaatttcaattgcattccagaata |
37259782 |
T |
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