View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_12 (Length: 385)
Name: NF4464_low_12
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 19 - 381
Target Start/End: Complemental strand, 13798269 - 13797886
Alignment:
| Q |
19 |
gattttcccttttaggagtaagtggataccagattattacttattttttatacatatactttctgcaaga----aaaatacttttctttttgttactata |
114 |
Q |
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| T |
13798269 |
gattttcccttttaggagtaagtggataccagattattacttattttttatacgtatactttctgcaagaaattaaaatacttttctttttgttactata |
13798170 |
T |
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| Q |
115 |
agacggcttataaacatggacagctacttgtg--------ttgttgggagtgcctggcttcttgaatatattttatctctcttataagatatgagaatgt |
206 |
Q |
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| T |
13798169 |
agacggc-tataaacatggacagctacttgtgttgttgccttgttgggagtgcctggcttcttgaatatattttatctctcttataagatatgagaatgt |
13798071 |
T |
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| Q |
207 |
tatgtttataactttttagatgttcgaaatctaaaaataaaaata------------gatgttcaagacagaatgtgtatacattatacatactatttca |
294 |
Q |
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| T |
13798070 |
tatgtttataactttttagatgttcgaaatctaaaaataaaaataaaaataaaaattgatgttcaagacagaatgt-tat-gtttatacatactatttca |
13797973 |
T |
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| Q |
295 |
ttttctatgtagtagttgtttatctttctcatagtcattgatttttaaatgttcaaataacattatatcccttcacctttgcttctc |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
13797972 |
ttttctatgtagtagttgtttatctttctcatagtcattgatttttaaatgttcaaataacattatatcccttcaccttagcttctc |
13797886 |
T |
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