View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_13 (Length: 378)
Name: NF4464_low_13
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 37321054 - 37320700
Alignment:
| Q |
1 |
atttttcatagtaatagcattcttataagttcattatcggatcctcaacaagaacaacaacataaagcattcttagttcattcacatcaaccatggcaaa |
100 |
Q |
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| T |
37321054 |
atttttcatagtaatagcattcttataagttcattatccgatcctcaacaacaacaacaa---aaagcattcttagttcattcacatcaaccatggcaaa |
37320958 |
T |
|
| Q |
101 |
attctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcctatcccca |
200 |
Q |
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| T |
37320957 |
attctcatcatgttccacaattctcatttctttgaaccttactttcgtctccataatatcccttgccactgccactaattactataaaagcctatcccca |
37320858 |
T |
|
| Q |
201 |
acaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtatttgtagctgagc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320857 |
acaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggaccaaaacctagcatggtatttgtagctgagc |
37320758 |
T |
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| Q |
301 |
ccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgaccc |
358 |
Q |
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| T |
37320757 |
ccaatggcaaggtaaaaaatgccttgccattcgggacagttgtggcgatggatgaccc |
37320700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 68 - 361
Target Start/End: Complemental strand, 37317414 - 37317118
Alignment:
| Q |
68 |
cattcttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatccctt |
164 |
Q |
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| T |
37317414 |
cattctttgttcattcgcatcaaccatggcaaaatcctcaacattctccataactcttctaatttctttgaaccttactttcctctctataatatccctt |
37317315 |
T |
|
| Q |
165 |
gccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgt |
264 |
Q |
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||||||||||||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37317314 |
gccactgccactaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgt |
37317215 |
T |
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| Q |
265 |
caggaccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccatt |
361 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37317214 |
caggaccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccatt |
37317118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 73 - 361
Target Start/End: Complemental strand, 37324968 - 37324678
Alignment:
| Q |
73 |
ttagttcattcacatcaaccatggcaaaattctcatcatgttccacaa---ttctcatttctttgaaccttactttcgtctccataatatcccttgccac |
169 |
Q |
| |
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|||||||||| ||| ||||||||||||||| |||| ||| ||| || |||| ||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
37324968 |
ttagttcattaaca-caaccatggcaaaatcctcaacattccccataactcttctaatttctttgaaccttactttcctctccataatatcccttaccac |
37324870 |
T |
|
| Q |
170 |
tgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcagga |
269 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
37324869 |
ggccactaattactatcaaagcctatctccaacaatgctgggttttcaagaagagaaattcactcaccttcacttttactttcatgacattgtgtcggga |
37324770 |
T |
|
| Q |
270 |
ccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccatt |
361 |
Q |
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|||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| |
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| T |
37324769 |
ccaaaaccaagcatggtatttatagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccatt |
37324678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 241
Target Start/End: Complemental strand, 37306978 - 37306893
Alignment:
| Q |
156 |
atatcccttgccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttca |
241 |
Q |
| |
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|||||||| || || ||||| |||||||| |||||| |||| ||| | || ||||||||||||||||||||||||| |||||||| |
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| T |
37306978 |
atatccctggctacagccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttca |
37306893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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