View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_14 (Length: 373)
Name: NF4464_low_14
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 351
Target Start/End: Complemental strand, 52384163 - 52383832
Alignment:
| Q |
17 |
agttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcattaggaatgacttatttttcaaattgtgaatcgt |
116 |
Q |
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| T |
52384163 |
agttttcaagatagaatttattatgtggacacgaccatggttatcaaatcaaaattctattagtcatcaggaaagacttatttttcaaattgtgaatcgt |
52384064 |
T |
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| Q |
117 |
aagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcgtacaaatttgaacnnnnnnnngtgatcgactg |
216 |
Q |
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| T |
52384063 |
aagatacattaccaataagttgctgagataaacaaatgacaaaagaaaagtagttggttatattgtcctacaaatttgaacaaaaaaaagtgatcgactg |
52383964 |
T |
|
| Q |
217 |
ctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaatagatgatatacattataagttagta |
316 |
Q |
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| T |
52383963 |
ctttaagtctagatagttgttggtcagaatagatcataatgaatcagaattcaaaatgagattcatgtcgaaaata---gatatacattataagttagta |
52383867 |
T |
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| Q |
317 |
tcgaattgagttcaacaagctaaactgaatctctg |
351 |
Q |
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| T |
52383866 |
tcgaattgagttcaacaagctaaactgaatctctg |
52383832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 25093449 - 25093409
Alignment:
| Q |
245 |
atagatcataatgaatcagaattcaaaatgagattcatgtc |
285 |
Q |
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| T |
25093449 |
atagatcataatgaatcaacattcaagatgagattcatgtc |
25093409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 35590583 - 35590629
Alignment:
| Q |
249 |
atcataatgaatcagaattcaaaatgagattcatgtcgaaaatagat |
295 |
Q |
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| T |
35590583 |
atcataatgaatcagaattcaagatgagaatcgtgtcaaaaatagat |
35590629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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