View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_low_15 (Length: 357)

Name: NF4464_low_15
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_low_15
NF4464_low_15
[»] scaffold0536 (5 HSPs)
scaffold0536 (9-191)||(6268-6450)
scaffold0536 (238-336)||(6497-6595)
scaffold0536 (14-191)||(10257-10432)
scaffold0536 (273-331)||(10514-10572)
scaffold0536 (65-147)||(1278-1360)
[»] chr4 (8 HSPs)
chr4 (28-191)||(48912121-48912284)
chr4 (30-191)||(48958384-48958545)
chr4 (238-331)||(48912331-48912424)
chr4 (9-191)||(48965566-48965748)
chr4 (238-331)||(48958244-48958337)
chr4 (238-330)||(48965430-48965519)
chr4 (238-320)||(48961404-48961486)
chr4 (154-188)||(48974349-48974383)
[»] chr6 (3 HSPs)
chr6 (28-191)||(12589945-12590108)
chr6 (28-191)||(12483240-12483403)
chr6 (272-332)||(12590192-12590252)
[»] chr2 (5 HSPs)
chr2 (33-191)||(13448600-13448758)
chr2 (238-330)||(13448464-13448553)
chr2 (238-330)||(13440301-13440390)
chr2 (238-326)||(13454939-13455024)
chr2 (32-108)||(13455154-13455230)
[»] chr7 (2 HSPs)
chr7 (78-190)||(3417356-3417468)
chr7 (238-330)||(3417516-3417605)
[»] chr5 (3 HSPs)
chr5 (78-191)||(28385571-28385684)
chr5 (242-327)||(28385438-28385520)
chr5 (280-330)||(12540786-12540836)
[»] chr8 (1 HSPs)
chr8 (238-330)||(12641467-12641559)


Alignment Details
Target: scaffold0536 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 6268 - 6450
Alignment:
Q  9 agcacagaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6268 agcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 6367  T
Q  109 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6368 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 6450  T

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Target: scaffold0536; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 238 - 336
Target Start/End: Original strand, 6497 - 6595
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagct 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaaagct 6595  T

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Target: scaffold0536; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 14 - 191
Target Start/End: Original strand, 10257 - 10432
Alignment:
Q  14 agaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatg 113  Q
    |||| ||| |||| ||||||||||||||||| |||||||||||||||||  ||| ||||| |||||  |||||||||||||| |||||||||||| ||||    
T  10257 agagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcctatg 10354  T
Q  114 ccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
       |||  | |||||||||||||| |||||||| ||  || |||||||||||||| || ||||  |||| ||||||||    
T  10355 ttatttttcagataaacaactttatgagattgcgtgcagggtagaagcatcgggttacgaatttgtatgagttgttcc 10432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 273 - 331
Target Start/End: Original strand, 10514 - 10572
Alignment:
Q  273 aaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccaca 331  Q
    ||||||||||||||||||||||| ||||||||| || || ||||||||| | |||||||    
T  10514 aaagaagaagggtttgattattaagggttgggcccctcaggttatgattctaagccaca 10572  T

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Target: scaffold0536; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Original strand, 1278 - 1360
Alignment:
Q  65 actcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgca 147  Q
    |||| |||| ||||||||||||  | |||||||||||||||| ||| |||  |||||| ||||||||| | || |||||||||    
T  1278 actcaaagcgagataactcagtactctacatatgctttggaaccttttgctatttccctgataaacaattgtatgagattgca 1360  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 48912121 - 48912284
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    |||||||||||||||||||||||| ||||||||||  ||||||| | ||||||||| ||| ||||||||||||||||||||  ||| | |||  ||||||    
T  48912121 agtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaatgtcatttttcggata 48912220  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||| |||||||| || ||||| ||||||||| ||||| |||||||||||||||||||    
T  48912221 aacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc 48912284  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 191
Target Start/End: Complemental strand, 48958545 - 48958384
Alignment:
Q  30 tgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaa 129  Q
    |||||| |||||||| |  ||||||||||||||  ||| ||||  | |||||||||||||||||||||||||||||||| ||||   |||  | ||||||    
T  48958545 tgttgttagtgtgcatggttgtctgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatctgataaa 48958446  T
Q  130 caactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||| |||||||| ||||||||||||||||| |||||| ||||  |||||||||||||    
T  48958445 caactttatgagattgcgtgtgggatagaagcatcaggtcacgaatttgtatgggttgttcc 48958384  T

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Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 331
Target Start/End: Original strand, 48912331 - 48912424
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccaca 331  Q
    |||||||||||||| || |||||||||| ||||||||||||||||| | ||||||||| ||||||||||||||| ||||||||| |||||||||    
T  48912331 tggttgccaaaggggtttgaagagagaattatcggaaagaagaaggctatgattattaagggttgggctccacaggttatgattctgagccaca 48912424  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 48965748 - 48965566
Alignment:
Q  9 agcacagaggggacaacaaagtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||| ||||||||||| | ||||  ||||| ||||| |||||| ||||||||||  | || |||| | |||||||||||||||||||| |||||||||||    
T  48965748 agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagc 48965649  T
Q  109 ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
     | || | ||  | ||||||||| ||||| |||||||| ||||  |||||||||||||||||  | || ||||||||| ||||    
T  48965648 ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc 48965566  T

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Target: chr4; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 238 - 331
Target Start/End: Complemental strand, 48958337 - 48958244
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccaca 331  Q
    |||||||| || ||||||||||||||||| || ||||||||||| |||||||| |||||||| ||||| ||||||||| ||||| |||||||||    
T  48958337 tggttgccgaaaggattcgaagagagaaacattggaaagaagaaaggtttgatcattagggggtgggccccacaagttttgattctgagccaca 48958244  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 48965519 - 48965430
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    ||||| ||||||||||||||||||||||| || |||||||||   |||||||||||||||||||||||||| || ||| ||||| ||||||||    
T  48965519 tggttaccaaagggattcgaagagagaaacattggaaagaag---ggtttgattattaggggttgggctccgcaggttctgattctgagccac 48965430  T

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Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 48961486 - 48961404
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgat 320  Q
    |||||||| || ||||| ||||||||||| || | |||||||||||||||||| |||| ||| ||||| ||||||||||||||    
T  48961486 tggttgccgaaaggatttgaagagagaaacattgaaaagaagaagggtttgatcattaaggggtgggccccacaagttatgat 48961404  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Complemental strand, 48974383 - 48974349
Alignment:
Q  154 atagaagcatcgggtcacaaattcatatgggttgt 188  Q
    |||||||||||||||||| ||||||||||||||||    
T  48974383 atagaagcatcgggtcaccaattcatatgggttgt 48974349  T

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Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 12589945 - 12590108
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    ||||||||||  ||||| |||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||| ||| |||||  |||| | ||||    
T  12589945 agtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagcatatgctatttctcagata 12590044  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||||||||| |||||| | ||||| ||||||||||| || ||| ||||| |||||||| ||||    
T  12590045 aacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattcc 12590108  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 28 - 191
Target Start/End: Original strand, 12483240 - 12483403
Alignment:
Q  28 agtgttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggata 127  Q
    ||||||||||| ||||| |||||||  ||||||||| |||| |||| ||| || ||||||||||||||||||||||| ||| |||||  |||| | ||||    
T  12483240 agtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcctatgcaatttctctgata 12483339  T
Q  128 aacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    |||| |||||||| ||| |||| || ||||||||||||||| | ||||||||||||||||||||    
T  12483340 aacagctttacgaaatttcatgcggaatagaagcatcgggtaaaaaattcatatgggttgttcc 12483403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 272 - 332
Target Start/End: Original strand, 12590192 - 12590252
Alignment:
Q  272 gaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccacaa 332  Q
    ||||||||||||||||||| |||||||||||||| |||||||| |||||| ||||||||||    
T  12590192 gaaagaagaagggtttgatcattaggggttgggccccacaagtaatgattatgagccacaa 12590252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 191
Target Start/End: Complemental strand, 13448758 - 13448600
Alignment:
Q  33 tgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaa 132  Q
    ||||| |||||||||| | ||||||||||| || ||  ||  || ||||||||||||||||||||| ||||||||| |   |  |||  | |||||||||    
T  13448758 tgtgaatgtgcacgagagcctgagttggctcgattcagagagagttaactcagtgttgtacatatgttttggaagcatcaactatttttctgataaacaa 13448659  T
Q  133 ctttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc 191  Q
    || |||||||| ||||||| |||||||||||| ||||||  ||||||||||||||||||    
T  13448658 ctatacgagatggcatgtgcgatagaagcatccggtcacccattcatatgggttgttcc 13448600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 13448553 - 13448464
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    ||||| || |||||||| |||||||||||||||||   ||||||||||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  13448553 tggttaccgaagggatttgaagagagaaatatcgg---gaagaagggtttgatcattaggggttgggccccacaggttaagatattgagccac 13448464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 330
Target Start/End: Complemental strand, 13440390 - 13440301
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    ||||||||||||||||||||||||||||| ||    | || || ||||||||| |||| ||||||||| |||||||||| ||| |||||||||    
T  13440390 tggttgccaaagggattcgaagagagaaacat---taggaggatgggtttgatcattaagggttgggccccacaagttaagatattgagccac 13440301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 238 - 326
Target Start/End: Complemental strand, 13455024 - 13454939
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgag 326  Q
    |||||||| |||||||| ||||||| ||| ||||   |||| ||||||||||| |||||||||||||| |||||||||| ||| |||||    
T  13455024 tggttgccgaagggatttgaagagaaaaacatcg---agaaaaagggtttgatcattaggggttgggccccacaagttaagatattgag 13454939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 108
Target Start/End: Complemental strand, 13455230 - 13455154
Alignment:
Q  32 ttgtgagtgtgcacgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc 108  Q
    |||||| ||| |||||||| ||||| ||||| ||||| |||  || ||||||||| ||||||||||| |||||||||    
T  13455230 ttgtgaatgtacacgagtgcctgagctggcttgactcaaagagagttaactcagtattgtacatatgttttggaagc 13455154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 78 - 190
Target Start/End: Original strand, 3417356 - 3417468
Alignment:
Q  78 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 177  Q
    ||||||||||||||||||||| ||||||||||||  |  |||| | ||||||||||| || ||||||||||  |  ||||||||||||||||||  ||||    
T  3417356 taactcagtgttgtacatatgttttggaagcttaaactatttctctgataaacaactatatgagattgcatacgcaatagaagcatcgggtcacccattc 3417455  T
Q  178 atatgggttgttc 190  Q
    |||||||||||||    
T  3417456 atatgggttgttc 3417468  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 3417516 - 3417605
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    |||||||| |||||||| || |||||||| || |||||||   ||||||||||  ||||||||||||| ||||| |||  ||| |||||||||    
T  3417516 tggttgccgaagggatttgaggagagaaacattggaaaga---agggtttgatcgttaggggttgggccccacaggttcagatattgagccac 3417605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 191
Target Start/End: Complemental strand, 28385684 - 28385571
Alignment:
Q  78 taactcagtgttgtacatatgctttggaagcttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattc 177  Q
    |||||||||  |||||||||| ||||||||| ||  || |||| | ||||||||||| || ||||||||||| |   |||||||||| ||||||  ||||    
T  28385684 taactcagttgtgtacatatgttttggaagcataaaccatttctctgataaacaactatatgagattgcatgcgcagtagaagcatcaggtcacccattc 28385585  T
Q  178 atatgggttgttcc 191  Q
    ||||||||||||||    
T  28385584 atatgggttgttcc 28385571  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 242 - 327
Target Start/End: Complemental strand, 28385520 - 28385438
Alignment:
Q  242 tgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagc 327  Q
    ||||||||||||| || |||||||| || |||||||||   ||||| || || ||||||||||| ||||||||| |||| ||||||    
T  28385520 tgccaaagggatttgaggagagaaacattggaaagaag---ggtttcataatcaggggttgggccccacaagttctgatattgagc 28385438  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 330
Target Start/End: Complemental strand, 12540836 - 12540786
Alignment:
Q  280 aagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    ||||||||||| |||||||||||||| ||||| |||| ||| |||||||||    
T  12540836 aagggtttgatcattaggggttgggccccacaggttaagatattgagccac 12540786  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 238 - 330
Target Start/End: Original strand, 12641467 - 12641559
Alignment:
Q  238 tggttgccaaagggattcgaagagagaaatatcggaaagaagaagggtttgattattaggggttgggctccacaagttatgattttgagccac 330  Q
    |||||||| || |||||||||||||||||| | | ||| ||||| ||||| || |||||||  ||||| |||||||| |||||||| ||||||    
T  12641467 tggttgcctaaaggattcgaagagagaaatgttgaaaataagaaaggttttatcattagggagtgggccccacaagtaatgattttaagccac 12641559  T

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