View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_low_18 (Length: 334)

Name: NF4464_low_18
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_low_18
NF4464_low_18
[»] chr1 (3 HSPs)
chr1 (14-334)||(12609619-12609939)
chr1 (115-334)||(15885928-15886147)
chr1 (129-334)||(12636830-12637035)
[»] scaffold0059 (1 HSPs)
scaffold0059 (118-334)||(61971-62187)
[»] chr3 (14 HSPs)
chr3 (213-328)||(23145833-23145948)
chr3 (213-332)||(23038954-23039073)
chr3 (208-334)||(22941540-22941666)
chr3 (213-332)||(23032627-23032746)
chr3 (213-328)||(23036083-23036198)
chr3 (211-325)||(23148669-23148783)
chr3 (132-331)||(22971783-22971982)
chr3 (212-322)||(23016974-23017084)
chr3 (213-330)||(23139959-23140076)
chr3 (208-334)||(22831743-22831869)
chr3 (208-334)||(22916840-22916966)
chr3 (207-328)||(23024179-23024300)
chr3 (212-334)||(22932125-22932247)
chr3 (207-332)||(22986184-22986309)
[»] scaffold0554 (1 HSPs)
scaffold0554 (213-332)||(6722-6841)
[»] chr6 (1 HSPs)
chr6 (213-332)||(21779726-21779845)
[»] chr8 (1 HSPs)
chr8 (208-334)||(5594196-5594322)
[»] chr5 (3 HSPs)
chr5 (201-235)||(41317195-41317229)
chr5 (285-334)||(7154499-7154548)
chr5 (202-235)||(41329236-41329269)
[»] chr2 (1 HSPs)
chr2 (274-332)||(2433650-2433708)


Alignment Details
Target: chr1 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 12609619 - 12609939
Alignment:
Q  14 agatgaacaaatctttatttccaaagtaaatatggaacaacaaattcaaggtaatacttatagcctttgcttgtatgtatggatttatcttgccacagaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12609619 agatgaacaaatctttatttccaaagtaaatatggaacaacaaattcaaggtaatacttatagcctttgcttgtatgtatggttttatcttgccacagaa 12609718  T
Q  114 cgaagaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcataccattgg 213  Q
     ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||| |||||||    
T  12609719 ggaagaggagctgtaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaattgctcagtcatgtctaagtcctcacctttcattccattgg 12609818  T
Q  214 gaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaaa 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||    
T  12609819 gaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattcttcttccagcaccaaa 12609918  T
Q  314 gggaatgtactcaaaattatt 334  Q
    |||||||||||||||||||||    
T  12609919 gggaatgtactcaaaattatt 12609939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 115 - 334
Target Start/End: Complemental strand, 15886147 - 15885928
Alignment:
Q  115 gaagaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcataccattggg 214  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||| |||||| | |||| |||    
T  15886147 gaagaggagcagtaggtatcaagtacaagtcatcttttcttttgacggtcgctccaaattgctcggtcatgtctaagtcctcacctttcgttccatcggg 15886048  T
Q  215 aagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaaag 314  Q
    |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||  | || || |||||||| ||||||| || |||     
T  15886047 aagcctccaatcaaagtgatacaacaacaatgcaagtgccaactcaacatttaccaaaccaaatgttatgcccgggcatattcttcttccagaaccaaaa 15885948  T
Q  315 ggaatgtactcaaaattatt 334  Q
    ||||||||||||||||||||    
T  15885947 ggaatgtactcaaaattatt 15885928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 129 - 334
Target Start/End: Original strand, 12636830 - 12637035
Alignment:
Q  129 ggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcataccattgggaagcttccaatcaa 228  Q
    |||||||| |||||||||  ||||||||| ||  | || |||||| ||||||||||||  || ||||| |||||||| |||||||||||| |||||||||    
T  12636830 ggtatcaagtacaagtcactttttcttttaacattagccccaaattgctcagtcatgtccaaatcctcacctttcattccattgggaagcctccaatcaa 12636929  T
Q  229 agtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaaagggaatgtactcaaa 328  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||| | ||||| |||||||| ||||| |||| ||| ||||||||||||||    
T  12636930 agtgatataacaacaatgcaagtgccaactcaacatttatcaaaccaaatgtgatgcctgggcatattcttcttcctgcaccaaaaggaatgtactcaaa 12637029  T
Q  329 attatt 334  Q
    ||||||    
T  12637030 attatt 12637035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 118 - 334
Target Start/End: Original strand, 61971 - 62187
Alignment:
Q  118 gaggagctctaggtatcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcataccattgggaag 217  Q
    |||||||  |||||||||| |||||||||||||||||||| || ||| ||||||||  |||||||||||  ||||| || | |||||| |||||||||||    
T  61971 gaggagcaataggtatcaagtacaagtcatcttttcttttaactgtcactccaaatttctcagtcatgtccaagtcttcacatttcattccattgggaag 62070  T
Q  218 cttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaaaggga 317  Q
    ||||||||||||||||||||||| || ||||||||||| ||||| | | |||||||||||| | || ||||| ||||||||  ||||||||| ||| |||    
T  62071 cttccaatcaaagtgatacaacaacattgcaagtgccagctcaagactcatcaaaccaaatttactgcctgggcatattctttttccagcaccaaaagga 62170  T
Q  318 atgtactcaaaattatt 334  Q
    |||||||| ||||||||    
T  62171 atgtactcgaaattatt 62187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 23145833 - 23145948
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||| ||||| |||||||| | || ||||||  ||| ||||| |||| |||||||||||||||| |||||||||||||| |||||||||| ||    
T  23145833 ggaagcttccagtcaaaatgatacaataacattgcaaggaccagctcaatatttgtcaaaccaaatgtgctccctggacatattcttcttccagcaccaa 23145932  T
Q  313 agggaatgtactcaaa 328  Q
    | ||||||||||||||    
T  23145933 aaggaatgtactcaaa 23145948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 23038954 - 23039073
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||| ||||| |||||||||| || |||||| |||| ||||| | || |||||||||||||||| ||||| |||||||| ||||| |||| ||    
T  23038954 ggaagcttccagtcaaaatgatacaacaacattgcaagggccagctcaatacttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa 23039053  T
Q  313 agggaatgtactcaaaatta 332  Q
    | |||||||||||| |||||    
T  23039054 aaggaatgtactcataatta 23039073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 22941666 - 22941540
Alignment:
Q  208 cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagc 307  Q
    |||||||||| ||||||||||||||||||| || |||||||||||   |||||||||| | ||||||||||||    || ||||| ||||| ||||||||    
T  22941666 cattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgttactcccggacacattcttcttccagc 22941567  T
Q  308 acaaaagggaatgtactcaaaattatt 334  Q
    || ||| |||||| |||||||||||||    
T  22941566 accaaatggaatgaactcaaaattatt 22941540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 23032627 - 23032746
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    |||||| |||| ||||| |||||||||| ||  || || |||| ||||| |||| ||||||||||||| || ||||| |||||||| ||||| |||| ||    
T  23032627 ggaagcgtccagtcaaaatgatacaacaacatcgcgagggccagctcaatatttctcaaaccaaatgtactccctgggcatattcttcttccggcaccaa 23032726  T
Q  313 agggaatgtactcaaaatta 332  Q
    ||||||||||||||||||||    
T  23032727 agggaatgtactcaaaatta 23032746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 328
Target Start/End: Original strand, 23036083 - 23036198
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||| ||||| |||||||||| ||  ||||| ||||  |||| |||| |||||||||||||||| ||||| |||||||| ||||| |||| ||    
T  23036083 ggaagcttccagtcaaaatgatacaacaacatcgcaagggccatgtcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa 23036182  T
Q  313 agggaatgtactcaaa 328  Q
    | ||||||||||||||    
T  23036183 aaggaatgtactcaaa 23036198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 211 - 325
Target Start/End: Original strand, 23148669 - 23148783
Alignment:
Q  211 tgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcaca 310  Q
    ||||||||||||| ||||| |||||||||| || ||| || |||| ||||| |||| ||||||||||| |||| ||||| |||||||| ||||| ||||     
T  23148669 tgggaagcttccagtcaaaatgatacaacaacattgctagggccagctcaatatttctcaaaccaaatatgctccctgggcatattcttcttccggcacc 23148768  T
Q  311 aaagggaatgtactc 325  Q
    ||| |||||||||||    
T  23148769 aaaaggaatgtactc 23148783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 132 - 331
Target Start/End: Original strand, 22971783 - 22971982
Alignment:
Q  132 atcaaatacaagtcatcttttcttttgacggtcgctccaaatggctcagtcatgtttaagtcctcgcctttcataccattgggaagcttccaatcaaagt 231  Q
    |||||||||| ||||||||||||| | || |  ||||||||| |||||||||| |  || ||||| | |||||| |||   |||||||||||||||||||    
T  22971783 atcaaatacatgtcatcttttcttataacagaagctccaaatagctcagtcatatccaaatcctcacatttcattccaccaggaagcttccaatcaaagt 22971882  T
Q  232 gatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaaagggaatgtactcaaaatt 331  Q
    || |||| |  || ||||||| ||  |||||||||  || |||| |  |  | |||||||| ||||| |||||||||| ||| |||||||||||||||||    
T  22971883 gagacaataagaaagcaagtgtcagttcaacatttgccataccatagttaatgcctggacaaattcttcttccagcaccaaatggaatgtactcaaaatt 22971982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 212 - 322
Target Start/End: Original strand, 23016974 - 23017084
Alignment:
Q  212 gggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaa 311  Q
    |||||||||||| ||||| |||||||||| ||  ||||| ||||||||||||||| ||||||| ||||| || || || |||||||| |||||| ||| |    
T  23016974 gggaagcttccagtcaaaatgatacaacaacatcgcaagggccaactcaacatttctcaaaccgaatgtactcccagggcatattcttcttccaccacca 23017073  T
Q  312 aagggaatgta 322  Q
    || ||||||||    
T  23017074 aaaggaatgta 23017084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 213 - 330
Target Start/End: Original strand, 23139959 - 23140076
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||||||||| | | ||||||    |||||| | ||||||||||||| ||||||||||| |||| ||||| |||||||| | ||| |||| ||    
T  23139959 ggaagcttccaatcaaaataaaacaacaatgttgcaagggtcaactcaacatttctcaaaccaaatatgcttcctgggcatattcttcgtcccgcaccaa 23140058  T
Q  313 agggaatgtactcaaaat 330  Q
    | ||||||||||||||||    
T  23140059 aaggaatgtactcaaaat 23140076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 334
Target Start/End: Original strand, 22831743 - 22831869
Alignment:
Q  208 cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattctacttccag 306  Q
    ||||| |||| ||||||||||||||||||| || |||||||||||   |||||||||| | ||||||||||||| || || ||| | ||||| || ||||    
T  22831743 cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag 22831841  T
Q  307 cacaaaagggaatgtactcaaaattatt 334  Q
    ||| ||| |||||| |||||||||||||    
T  22831842 caccaaaaggaatgaactcaaaattatt 22831869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 22916966 - 22916840
Alignment:
Q  208 cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagc 307  Q
    |||||||||| ||||||||||||||||||| || |||||||||||  ||||||| ||| | ||| |||||||||   |||||||| ||||| || |||      
T  22916966 cattgggaagtttccaatcaaagtgatacatcaacaatgcaagtgaaaactcaatattgaccaatccaaatgtgacccctggacacattcttctgccact 22916867  T
Q  308 acaaaagggaatgtactcaaaattatt 334  Q
     | ||| |||||| |||||||||||||    
T  22916866 gccaaacggaatgaactcaaaattatt 22916840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 328
Target Start/End: Original strand, 23024179 - 23024300
Alignment:
Q  207 ccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccag 306  Q
    ||||| ||||||||||||||||| || ||||||| |  |||||| || | ||||||| ||  |||||||||| |||| |||||||||||||| | ||| |    
T  23024179 ccattaggaagcttccaatcaaaatggtacaacaactttgcaagggctagctcaacacttcgcaaaccaaatatgctccctggacatattcttcgtcccg 23024278  T
Q  307 cacaaaagggaatgtactcaaa 328  Q
    ||| ||| ||||| ||||||||    
T  23024279 caccaaaaggaatatactcaaa 23024300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 334
Target Start/End: Original strand, 22932125 - 22932247
Alignment:
Q  212 gggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaa 311  Q
    |||||| |||||||||||||| |||| || |||||||||||  ||||||||| | | ||| ||||||||    |||||||| ||||| || |||   | |    
T  22932125 gggaagtttccaatcaaagtggtacatcaacaatgcaagtgaaaactcaacactgaccaatccaaatgtaacccctggacacattcttctgccactgcca 22932224  T
Q  312 aagggaatgtactcaaaattatt 334  Q
    || |||||| |||||||||||||    
T  22932225 aacggaatgaactcaaaattatt 22932247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 332
Target Start/End: Original strand, 22986184 - 22986309
Alignment:
Q  207 ccattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccag 306  Q
    ||||||||||| ||||||||||| |||||||| || | ||||||  |   ||||||||||  || |||| |  |  | || ||||| ||||| |||||||    
T  22986184 ccattgggaagtttccaatcaaaatgatacaatatgagtgcaaggacttgctcaacatttgccataccataattcatgccaggacaaattctccttccag 22986283  T
Q  307 cacaaaagggaatgtactcaaaatta 332  Q
    ||| ||| ||||||||||||||||||    
T  22986284 caccaaatggaatgtactcaaaatta 22986309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 213 - 332
Target Start/End: Complemental strand, 6841 - 6722
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||| ||||| |||||||||| ||  ||||| |||| |||||||||| ||||||||||| | || ||||| || ||||| |||||||||| ||    
T  6841 ggaagcttccagtcaaaatgatacaacaacatcgcaagcgccagctcaacatttctcaaaccaaatatacttcctgggcaaattcttcttccagcaccaa 6742  T
Q  313 agggaatgtactcaaaatta 332  Q
    | ||||||||||||||||||    
T  6741 aaggaatgtactcaaaatta 6722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 213 - 332
Target Start/End: Original strand, 21779726 - 21779845
Alignment:
Q  213 ggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtgctacctggacatattctacttccagcacaaa 312  Q
    ||||||||||| ||||| |||||||||| ||  ||||| | |  ||||| |||| |||||||||||||||| ||||| |||||||| ||||| |||| ||    
T  21779726 ggaagcttccagtcaaaatgatacaacaacatcgcaagggtcgtctcaatatttctcaaaccaaatgtgctccctgggcatattcttcttccggcaccaa 21779825  T
Q  313 agggaatgtactcaaaatta 332  Q
    | ||||||||||||||||||    
T  21779826 atggaatgtactcaaaatta 21779845  T

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Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 334
Target Start/End: Complemental strand, 5594322 - 5594196
Alignment:
Q  208 cattgggaagcttccaatcaaagtgatacaacatcaatgcaagtgccaactcaacatttatcaaaccaaatgtg-ctacctggacatattctacttccag 306  Q
    ||||| |||| ||||||||||||||||||| || |||||||||||   |||||||||| | ||||||||||||| || || ||| | ||||| || ||||    
T  5594322 cattgagaagtttccaatcaaagtgatacatcaacaatgcaagtgggtactcaacattgaccaaaccaaatgtgactgcc-ggaaacattcttctaccag 5594224  T
Q  307 cacaaaagggaatgtactcaaaattatt 334  Q
    ||| ||| |||||| |||||||||||||    
T  5594223 caccaaaaggaatgaactcaaaattatt 5594196  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 41317229 - 41317195
Alignment:
Q  201 ttcataccattgggaagcttccaatcaaagtgata 235  Q
    ||||| |||||||||||||||||||||||||||||    
T  41317229 ttcattccattgggaagcttccaatcaaagtgata 41317195  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 7154548 - 7154499
Alignment:
Q  285 cctggacatattctacttccagcacaaaagggaatgtactcaaaattatt 334  Q
    |||||||| ||||| |||||||||| ||| ||||| ||||||||||||||    
T  7154548 cctggacacattcttcttccagcaccaaaaggaatatactcaaaattatt 7154499  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 235
Target Start/End: Complemental strand, 41329269 - 41329236
Alignment:
Q  202 tcataccattgggaagcttccaatcaaagtgata 235  Q
    |||| |||||||||||||||||||||||||||||    
T  41329269 tcattccattgggaagcttccaatcaaagtgata 41329236  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 332
Target Start/End: Complemental strand, 2433708 - 2433650
Alignment:
Q  274 caaatgtgctacctggacatattctacttccagcacaaaagggaatgtactcaaaatta 332  Q
    |||||||| | |||||||||||||| ||||| |||| ||| || |||||||||||||||    
T  2433708 caaatgtgattcctggacatattctccttcctgcaccaaaaggtatgtactcaaaatta 2433650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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