View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_19 (Length: 331)
Name: NF4464_low_19
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 4 - 313
Target Start/End: Original strand, 8244539 - 8244846
Alignment:
| Q |
4 |
tcacagtaataatgtttcacnnnnnnnttcatcatgcttgcattaaagatgattcttgttttgtaggcattggccaaaatggtgataactcgacaacttt |
103 |
Q |
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| T |
8244539 |
tcacagtaataatgtttcacaaaaa--ttcatcatgtttgcattaaagatgattcttgtttcgtaggcattggccaaaatggtgataactcgacaacttt |
8244636 |
T |
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| Q |
104 |
tcctattattagcagagttggtgactccaatccagtagatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgattgcagataataat |
203 |
Q |
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| T |
8244637 |
tcctattattagcagagttggtgactccaatccagtagatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgattgcagataataat |
8244736 |
T |
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| Q |
204 |
cagtcattgagatgaattcttgcttatcattcaactgtcaacaacgaccattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaaca |
303 |
Q |
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| T |
8244737 |
cagtcattgagatgaattcttgcttatcattcaactgtcaacaacgaccattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaaca |
8244836 |
T |
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| Q |
304 |
gtatttagta |
313 |
Q |
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|||||||||| |
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| T |
8244837 |
gtatttagta |
8244846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 48 - 191
Target Start/End: Original strand, 8190902 - 8191053
Alignment:
| Q |
48 |
aaagatgattcttgttttgtaggcattggccaaaatggtgataactcga--------caacttttcctattattagcagagttggtgactccaatccagt |
139 |
Q |
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| T |
8190902 |
aaagatgattcttgttttgtaggaattggccaaaatggtgataactcgataactcaacaacttttcttattattagcagcgttggtgactccaatccagt |
8191001 |
T |
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| Q |
140 |
agatgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgatt |
191 |
Q |
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| T |
8191002 |
agatgcatttttctcatgaaagtccttaagttctgcaaacacctgcgtgatt |
8191053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 252 - 308
Target Start/End: Original strand, 8191149 - 8191205
Alignment:
| Q |
252 |
cattctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagtatt |
308 |
Q |
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|||||| ||||||||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
8191149 |
cattctattaggatcctttctttgagtaagaaagaaatctcagaacagaacagtatt |
8191205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 42 - 191
Target Start/End: Original strand, 12833057 - 12833206
Alignment:
| Q |
42 |
tgcattaaagatgattcttgttttgtaggcattggccaaaatggtgataactcgacaacttttcctattattagcagagttggtgactccaatccagtag |
141 |
Q |
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| T |
12833057 |
tgcattaaacatgattcttgttttgtaggaattggccaaaatggtgataactcaacaacttttcctattattagcagtgttggtgactccaatccagtag |
12833156 |
T |
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| Q |
142 |
atgcaattttctcaggaaggtccttaagttctgcaaacacctgcatgatt |
191 |
Q |
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| T |
12833157 |
acacaattttctcaggaaggtccttaagttctgcaaacacctacatgatt |
12833206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 305
Target Start/End: Original strand, 40917007 - 40917056
Alignment:
| Q |
256 |
ctgttaggatcctttctttgagtaagaaagaaatgccggaacagaacagt |
305 |
Q |
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||||||||| | |||||||||||||||||||| | || |||||||||||| |
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| T |
40917007 |
ctgttaggaccgtttctttgagtaagaaagaattcccagaacagaacagt |
40917056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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