View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464_low_21 (Length: 320)
Name: NF4464_low_21
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 55954923 - 55955232
Alignment:
| Q |
1 |
caatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55954923 |
caatttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgca |
55955022 |
T |
|
| Q |
101 |
tttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55955023 |
tttactatcacgctagtctttattggtatttcatatccatctatgttgcaagcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctca |
55955122 |
T |
|
| Q |
201 |
tggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55955123 |
tggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtgc |
55955222 |
T |
|
| Q |
301 |
tttcttcatc |
310 |
Q |
| |
|
|||||||||| |
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|
| T |
55955223 |
tttcttcatc |
55955232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 55958482 - 55958788
Alignment:
| Q |
4 |
tttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattt |
103 |
Q |
| |
|
|||||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||||||||| |||||||||||||| |||||||| |||||| |
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| T |
55958482 |
tttattaaaatcaaaatatttactgtcatgaaacctctcaggtataaacttctctgcatcataccaatatttgggatctcttcacattgcccaagcattt |
55958581 |
T |
|
| Q |
104 |
actatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatgg |
203 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||| | |
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|
| T |
55958582 |
actaacacattagtctttattggtatttcatatccacctatgttgcatgcttccctgcattctcttataagcaaagtagcaggtggatgtaacctcatag |
55958681 |
T |
|
| Q |
204 |
tttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtgcttt |
303 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| | |||||||||||| |||||||| || |
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|
| T |
55958682 |
tttctttgatcactgaattcaagtaactaagttcttgtagatcactctcatatgttctctttttacctttaaaggtttctcttatttcagattgtgcctt |
55958781 |
T |
|
| Q |
304 |
cttcatc |
310 |
Q |
| |
|
||||||| |
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|
| T |
55958782 |
cttcatc |
55958788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 310
Target Start/End: Original strand, 12425253 - 12425559
Alignment:
| Q |
4 |
tttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| || ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||| |
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|
| T |
12425253 |
tttattaaaatcaaaaccagtactatcatgaaacctctccggtataaacttctcagcatcagaccaatgttcgggatctcttccaattgcccatgcattt |
12425352 |
T |
|
| Q |
104 |
actatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatgg |
203 |
Q |
| |
|
| ||| | | |||| |||| ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||| || |
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|
| T |
12425353 |
aatattaagttagtttttaaaggtatttcatatccacctatgttgcacgcttccctgcattctctcatgagcaatgtagcaggtgggtgtaacctcaggg |
12425452 |
T |
|
| Q |
204 |
tttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtgcttt |
303 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||| | |||||| || |
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|
| T |
12425453 |
tttctttgatcactaacttcaagtacccaagtttatgtagatcactctcatatattctcttcttacctttaacagcttctcttatttcagcttgtgcctt |
12425552 |
T |
|
| Q |
304 |
cttcatc |
310 |
Q |
| |
|
||||||| |
|
|
| T |
12425553 |
cttcatc |
12425559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 4 - 304
Target Start/End: Complemental strand, 12268432 - 12268132
Alignment:
| Q |
4 |
tttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattt |
103 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
12268432 |
tttattaaaatcaaaaccagtattatcatgaaacctctcaggtataaacttctctgcatcagaccaatgattgggatctcttccaattgcccatgcattt |
12268333 |
T |
|
| Q |
104 |
actatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaacctcatgg |
203 |
Q |
| |
|
| ||| | |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| ||| | | | ||||||||||||||||| || |
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|
| T |
12268332 |
aatattaaattagtctttataggtatttcatatcctcctatgttgcatgcttccctgcattctcttgtaagtattgcaccaggtgggtgtaacctcaggg |
12268233 |
T |
|
| Q |
204 |
tttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctctttttccctttaacagcttctcttatttcggattgtgcttt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||| ||||| |||||||| || |||||| | ||||||||||||| | ||||||||| |
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|
| T |
12268232 |
tttctttgatcactgacttcaagtaactaagttcatgcaaatcactttcataaattctcttcttacctttacaaacttctcttatttcagcttgtgcttt |
12268133 |
T |
|
| Q |
304 |
c |
304 |
Q |
| |
|
| |
|
|
| T |
12268132 |
c |
12268132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 4 - 267
Target Start/End: Original strand, 41795692 - 41795957
Alignment:
| Q |
4 |
tttattaaaatcaaaaccagtactatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcattt |
103 |
Q |
| |
|
||||||||| |||||| | |||| || | |||||| | | ||||||| || | ||||||||| |||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
41795692 |
tttattaaattcaaaatctttactgtcctgaaacctcttatgtataaaattatctgcatcatatcaatatttgggatctcttccgattgcccatgcattt |
41795791 |
T |
|
| Q |
104 |
actatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtgggtgtaac--ctcat |
201 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
41795792 |
actatcacactagtctttataggtatttcatatccacctatgttgcacgcttccctgcattctcttggaagcaaagtaaaaggtggatgtaacctctcat |
41795891 |
T |
|
| Q |
202 |
ggtttctttgatcactgacttcaagtaactaagttcatgtagatcactctcatatattctcttttt |
267 |
Q |
| |
|
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41795892 |
tgtttctttgatcactgactttaagtaaccaagttcatgtagatcactctcatatattctcttttt |
41795957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 7154428 - 7154255
Alignment:
| Q |
77 |
ggatctcttccaattgcccatgcatttactatcacgctagtctttattggtatttcatatccatctatgttgcacgcttccctgcattctcttggaagca |
176 |
Q |
| |
|
||||||||| | | |||||||||||||| ||||| |||| ||| ||||||||||||| ||||||||| || | ||| |||||||||| || | || |
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|
| T |
7154428 |
ggatctcttgccactgcccatgcatttatcatcactttagtattttttggtatttcataaccatctatgatggtcaattcagtgcattctctagggacca |
7154329 |
T |
|
| Q |
177 |
a---agtaaaaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagttcatgtagatca |
247 |
Q |
| |
|
| || ||||||||||||||||||| ||||||||||||||| |||| |||||| | ||||||| ||||||| |
|
|
| T |
7154328 |
ataaaggtgaaggtgggtgtaacctcattgtttctttgatcactaacttaaagtaagttagttcatttagatca |
7154255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 183 - 236
Target Start/End: Complemental strand, 7141549 - 7141496
Alignment:
| Q |
183 |
aaggtgggtgtaacctcatggtttctttgatcactgacttcaagtaactaagtt |
236 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||| |||||||| |||| |
|
|
| T |
7141549 |
aaggtgggtgtaacctcaatgtttctttgatcactaactttaagtaacttagtt |
7141496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 7141710 - 7141587
Alignment:
| Q |
25 |
actatcattaaacctttcaggtataaacttctttgcatcataccaatgtttgggatctcttccaattgcccatgcatttactatcacgctagtctttatt |
124 |
Q |
| |
|
|||||||| |||||| || || |||||| ||| ||||||| ||||| ||| ||||||||||| |||||||| ||||||| | || |||| ||| || |
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|
| T |
7141710 |
actatcatcaaacctctctggaataaacctctcagcatcattccaatatttaggatctcttcctattgcccacgcatttataaagactgtagtatttttt |
7141611 |
T |
|
| Q |
125 |
ggtatttcatatccatctatgttg |
148 |
Q |
| |
|
||||| ||||| |||||||| ||| |
|
|
| T |
7141610 |
ggtatatcatacccatctattttg |
7141587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 111
Target Start/End: Complemental strand, 41465836 - 41465802
Alignment:
| Q |
77 |
ggatctcttccaattgcccatgcatttactatcac |
111 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |
|
|
| T |
41465836 |
ggatctcttccaatcgcccatgcatttactatcac |
41465802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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