View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_low_22 (Length: 315)

Name: NF4464_low_22
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_low_22
NF4464_low_22
[»] chr4 (2 HSPs)
chr4 (11-300)||(42684963-42685252)
chr4 (269-298)||(8689343-8689372)
[»] chr8 (1 HSPs)
chr8 (220-289)||(33503697-33503768)
[»] chr6 (1 HSPs)
chr6 (236-296)||(20848611-20848671)
[»] chr7 (1 HSPs)
chr7 (231-293)||(24416812-24416874)
[»] chr2 (1 HSPs)
chr2 (213-289)||(37527034-37527111)
[»] chr3 (1 HSPs)
chr3 (220-286)||(10274553-10274620)
[»] chr1 (3 HSPs)
chr1 (222-296)||(34688654-34688728)
chr1 (222-296)||(34693182-34693256)
chr1 (252-290)||(8281522-8281560)


Alignment Details
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 42685252 - 42684963
Alignment:
Q  11 cagagataagagagtagaggaacaaaaacactaatataatactattatttcccagtttggcttaaactgaccttcgtctgcggggagaatagctctccaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||    
T  42685252 cagagataagagagtagaggaacaaaaacactaatataatactattatttcccagtttgccttaaattgaccttcgtctgcggggagaatagctctccaa 42685153  T
Q  111 accactacgagtgagtccttacaggggatgtaaagaggctacaagtaattaacttcaacgataaaccataatttccacccttttctcaagtctatcttag 210  Q
    |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42685152 accactacgagtgagtccttacagggaatgtaaagaggttacaagtaattaacttcaacgataaaccataatttccacccttttctcaagtctatcttag 42685053  T
Q  211 tccacaacaagatcctaagaaaatcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgtttaaaatgttttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  42685052 tccacaacaagatcctaagaaaatcaagagagaaagcttaaattcttcctctaatgagatctcactatccaaggtgtttgaaatgttttt 42684963  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Complemental strand, 8689372 - 8689343
Alignment:
Q  269 atctcactatccaaggtgtttaaaatgttt 298  Q
    ||||||||||||||||||||||||||||||    
T  8689372 atctcactatccaaggtgtttaaaatgttt 8689343  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 33503768 - 33503697
Alignment:
Q  220 agatcctaagaaaatcaagagagaaagcttaa--attcttcctctgatgagatctcactatccaaggtgttt 289  Q
    ||||||||||| |||||||||||||| |||    ||||||||||| |||||||||||||| |||||||||||    
T  33503768 agatcctaagagaatcaagagagaaaacttttttattcttcctctaatgagatctcactacccaaggtgttt 33503697  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 20848611 - 20848671
Alignment:
Q  236 aagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgtttaaaatgt 296  Q
    ||||||||||||||| ||||||||||| |||| |||| | ||||||||||||||| |||||    
T  20848611 aagagagaaagcttacattcttcctctaatgaaatcttattatccaaggtgtttagaatgt 20848671  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 293
Target Start/End: Original strand, 24416812 - 24416874
Alignment:
Q  231 aaatcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgtttaaaa 293  Q
    ||||||| ||||||| ||||||| ||| |||| ||||||||||||||| |||| |||||||||    
T  24416812 aaatcaaaagagaaaacttaaatcctttctctaatgagatctcactatacaagatgtttaaaa 24416874  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 37527111 - 37527034
Alignment:
Q  213 cacaacaagatcctaagaaaa-tcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgttt 289  Q
    ||||| ||||||||||||||| ||||||||  || | || || |||||||| ||||||||||| ||||||||||||||    
T  37527111 cacaagaagatcctaagaaaaatcaagagaagaaacatagatccttcctctaatgagatctcattatccaaggtgttt 37527034  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 10274553 - 10274620
Alignment:
Q  220 agatcctaaga-aaatcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtg 286  Q
    ||||||||||| ||||||||||||||| ||||    |||||||| |||||||||||||| ||||||||    
T  10274553 agatcctaagagaaatcaagagagaaaacttaggcccttcctctaatgagatctcactacccaaggtg 10274620  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 34688728 - 34688654
Alignment:
Q  222 atcctaaga-aaatcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgtttaaaatgt 296  Q
    ||||||||| |||||||||||||||||||| || |||| | | ||| |||||||||| |||||||||||| |||||    
T  34688728 atcctaagagaaatcaagagagaaagcttagat-cttcatttaatgggatctcactacccaaggtgtttagaatgt 34688654  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 34693256 - 34693182
Alignment:
Q  222 atcctaaga-aaatcaagagagaaagcttaaattcttcctctgatgagatctcactatccaaggtgtttaaaatgt 296  Q
    ||||||||| |||||||||||||||||||| || |||| | | ||| |||||||||| |||||||||||| |||||    
T  34693256 atcctaagagaaatcaagagagaaagcttagat-cttcatttaatgggatctcactacccaaggtgtttagaatgt 34693182  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 290
Target Start/End: Original strand, 8281522 - 8281560
Alignment:
Q  252 attcttcctctgatgagatctcactatccaaggtgttta 290  Q
    ||||||||||| |||||||||||||| ||||||||||||    
T  8281522 attcttcctctaatgagatctcactacccaaggtgttta 8281560  T

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