View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_26 (Length: 288)
Name: NF4464_low_26
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 48 - 271
Target Start/End: Complemental strand, 2479100 - 2478877
Alignment:
| Q |
48 |
ctacactcaccaggataaaataactttaaatccaaatatgtactaaaattattatttgtcatcgcaatactaaacacacacttagttaagctaaaacgag |
147 |
Q |
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| T |
2479100 |
ctacactcaccaggataaaataactttaaatccaaatatgtactaaaattattatttgtcatcgcaatactaaacacacacttagttaagctaaaacgag |
2479001 |
T |
|
| Q |
148 |
cttactaaccgggtttgaaaaacacggagagaccaaaatcggtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaa |
247 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2479000 |
cttactaaccgggcttgaaaaacacggagagaccaaaatctgtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaa |
2478901 |
T |
|
| Q |
248 |
atccctatgcataacacccatagt |
271 |
Q |
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|||||||||||||||||||||||| |
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| T |
2478900 |
atccctatgcataacacccatagt |
2478877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 40537175 - 40537131
Alignment:
| Q |
225 |
aacaagaaattctcaggcttcaaatccctatgcataacacccata |
269 |
Q |
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||||||||||| || ||||||||||| |||||||| ||||||||| |
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| T |
40537175 |
aacaagaaattttctggcttcaaatctctatgcatcacacccata |
40537131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 153 - 271
Target Start/End: Original strand, 41622920 - 41623038
Alignment:
| Q |
153 |
taaccgggtttgaaaaacacggagagaccaaaatcggtagctttaagcggcgaattctcatgcttactaagaaacaagaaattctcaggcttcaaatccc |
252 |
Q |
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| T |
41622920 |
taacctggcttgaaaaacacagagagaccaaaatccgtggccttgagaggcgaattttcttctttaccaagaaacaagaaattctcaggtttcaagtccc |
41623019 |
T |
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| Q |
253 |
tatgcataacacccatagt |
271 |
Q |
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|||||||||| |||||||| |
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| T |
41623020 |
tatgcataactcccatagt |
41623038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 210 - 269
Target Start/End: Complemental strand, 55168336 - 55168277
Alignment:
| Q |
210 |
tcatgcttactaagaaacaagaaattctcaggcttcaaatccctatgcataacacccata |
269 |
Q |
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|||| ||||||| || |||||||||||||||||||||||| | ||||| |||||||||| |
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| T |
55168336 |
tcatccttactagaaagcaagaaattctcaggcttcaaatcgcgatgcaaaacacccata |
55168277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 20501530 - 20501486
Alignment:
| Q |
225 |
aacaagaaattctcaggcttcaaatccctatgcataacacccata |
269 |
Q |
| |
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|||||||||||||| || |||| ||||||||||||||| |||||| |
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| T |
20501530 |
aacaagaaattctctggtttcagatccctatgcataactcccata |
20501486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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