View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4464_low_28 (Length: 275)
Name: NF4464_low_28
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_28 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 31360999 - 31360737
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatata |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31360999 |
ttgacagattgattcaaggaagtggattaagtgggccgattccgtctggaatttctcttttgagaaacttaactgacttgtatgtatgatat---atata |
31360903 |
T |
|
| Q |
101 |
ctgaagcaatggtagaaatttaaccttcattttaattatgtt--tccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatct |
198 |
Q |
| |
|
||||||| | ||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31360902 |
ctgaagcgaaggtggaaatttaactttcattttaattatgttgttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatct |
31360803 |
T |
|
| Q |
199 |
gaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagttgacttctct |
264 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||| |
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|
| T |
31360802 |
gaatatgcacctttgccacaacttaataatctgacattgttaaatactctgtgagttgatttctct |
31360737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 31324522 - 31324256
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatata |
100 |
Q |
| |
|
||||||||| || ||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| | |
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|
| T |
31324522 |
ttgacagaaccattcaagggagtggattaattgggccgattccttctgaaatttcacttttgagaaacttaattgacttgtatgtatgatattttataca |
31324423 |
T |
|
| Q |
101 |
ctgaag---caatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatc |
197 |
Q |
| |
|
|||| | ||| ||| | | |||||| |||||||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||| ||| |||||| |
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|
| T |
31324422 |
ctgatgaaacaagggttggagtttaactttcattttaattatgtttacttagctttaaatcaaatgtgatattcaggagaatcagtgatttgaatggatc |
31324323 |
T |
|
| Q |
198 |
tgaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagttgacttctct |
264 |
Q |
| |
|
||| |||||||||||||| |||||| || |||||||||||| |||||| ||||||| |||||| |
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|
| T |
31324322 |
tgagtatgcacctttgccacaacttaacaacatgacattgttaaatagactgcgagttgatttctct |
31324256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 31375347 - 31375104
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatata |
100 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||| |
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|
| T |
31375347 |
ttgacagagtgattcaaggaagtggattaagtgggccaatcccttctggaatttcacttttgcgaaacttaacagacttgtatgtatgacattttatatt |
31375248 |
T |
|
| Q |
101 |
c----tgaagcaatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggat |
196 |
Q |
| |
|
| |||||| | |||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
31375247 |
aaagataaagcaagtattgaaatttaacttttattttaattatgtttacttagctttgattcaaatgtgatattcaggagaattagtgatttgaagggat |
31375148 |
T |
|
| Q |
197 |
ctgaatatgcacctttgccgacacttaataatctgacattgtta |
240 |
Q |
| |
|
|||| ||||||||||||| |||||| || ||||||||||| |
|
|
| T |
31375147 |
ctgatcatgcacctttgccacaacttaacaacatgacattgtta |
31375104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 5 - 255
Target Start/End: Complemental strand, 31387634 - 31387369
Alignment:
| Q |
5 |
cagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgata---ttctat---a |
98 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| ||||| |||||||||||||||||| ||||||| |||||||||||||||||| || ||| | |
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|
| T |
31387634 |
cagaatgattcaaggaagtggattaagtgggccggttcctcctggaatttcacttttgacaaacttagttgacttgtatgtatgataattttatatttta |
31387535 |
T |
|
| Q |
99 |
tactga---------agcaatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctg |
189 |
Q |
| |
|
|||| | | ||| ||| |||||||||| |||||||||||||||||| |||| ||||| |||||||||||||||||||||||| |||||| | |
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|
| T |
31387534 |
tacttataatttataaacaagggttgaaatttaactttcattttaattatgtttacttacctttggttcaaatgtgatattcaggagaatcagtgattta |
31387435 |
T |
|
| Q |
190 |
agtggatctgaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagtt |
255 |
Q |
| |
|
| |||||||||||||||||||||||| |||||||||| |||||||||||| || ||||||||| |
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|
| T |
31387434 |
aatggatctgaatatgcacctttgccacaacttaataatatgacattgttaaaaactctgtgagtt |
31387369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 31307775 - 31307582
Alignment:
| Q |
15 |
caaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatatactgaagcaatggta |
114 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
31307775 |
caaggaagtggattaagtgggcctattccttctggaatttcacttttgacgaagttaactgacttgtatgtatgccattttatattt-------atggtt |
31307683 |
T |
|
| Q |
115 |
gaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatctgaatatgcacctttgc |
214 |
Q |
| |
|
||| ||| || || | ||||||||||||| |||| ||||||||||||||| | ||||||||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
31307682 |
gaacttttacttttactttaattatgtttacttacctttgattcaaatgtaacattcaggagaattagcgatttgagtggatctgaatatgcacctttgc |
31307583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 31418779 - 31419032
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctat-at |
99 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || |
|
|
| T |
31418779 |
ttgacagaatgatacaaggaagcggattaagtgggccgattccttctggaatttcacttttgacaaacttaactgacttgtatgtatgatattatataat |
31418878 |
T |
|
| Q |
100 |
actg---aagcaatggta-gaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatatt-caggagaattagtgatctgagtgg |
194 |
Q |
| |
|
|||| ||| || |||| |||||||||| |||| |||||||| |||| |||| ||| ||| ||||||| |||||||||||||||| ||| ||| |
|
|
| T |
31418879 |
actgataaaggaa-ggtatgaaatttaactttca-tttaattaggtttactta-----catttcaatttgatattccaggagaattagtgatttgaatgg |
31418971 |
T |
|
| Q |
195 |
atctgaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagtt |
255 |
Q |
| |
|
||| |||||| ||| ||||||| |||||||||| ||| || ||||| ||| |||||||| |
|
|
| T |
31418972 |
atccgaatattcacatttgccgcaacttaataatatgaaatcgttaaacagattgtgagtt |
31419032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 31293368 - 31293109
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatata |
100 |
Q |
| |
|
||||||||| || ||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||| |||| |||||||| |||| |||||| |
|
|
| T |
31293368 |
ttgacagaaccattcaagggagtggattaagcgggccaattccttctgaaatttcacttttgagaaacttatctgaattgtatgtgccgtattttatata |
31293269 |
T |
|
| Q |
101 |
ctga---agcaatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatc |
197 |
Q |
| |
|
|||| || || | |||||||||| || |||||| ||||| || |||| |||||||| |||| ||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31293268 |
ctgataaagtaaggactgaaatttaacttttattttagttatgattacttatctttgatttaaatttgatattcaggagaattagtgatttgaatggatt |
31293169 |
T |
|
| Q |
198 |
tgaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagttga |
257 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| || ||||||||| || ||||||||||| |
|
|
| T |
31293168 |
agaatattcacctttgccaccacttgataatatgccattgttaaaaaatctgtgagttga |
31293109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 3 - 266
Target Start/End: Complemental strand, 31282281 - 31282025
Alignment:
| Q |
3 |
gacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctata-tac |
101 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| |
|
|
| T |
31282281 |
gacagaatgattcaaggaagtggattaagtgggcctattccttctggaatttcacttttgaaaaacttaactgagttgtatgtatgatattatatattac |
31282182 |
T |
|
| Q |
102 |
tg---aagcaatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatct |
198 |
Q |
| |
|
|| || ||| | | ||||||||| ||||| || |||||||| |||| ||| |||||||||||| |||||||||| ||| ||||||| |
|
|
| T |
31282181 |
tgataaatcaaggtttgaaatttaaatttcatactacttatgtttacttacctt-----------tgatattcaggataattagtgatttgaatggatct |
31282093 |
T |
|
| Q |
199 |
gaatatgcacctttgccgacacttaataatctgacattgttaacaagactgtgagttgacttctctgc |
266 |
Q |
| |
|
|||||||||||||| || |||||||||| |||| ||||||| || ||||||||||| | |||||| |
|
|
| T |
31282092 |
gaatatgcacctttaccacaacttaataatatgactttgttaaaaactctgtgagttgattcctctgc |
31282025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 31256356 - 31256143
Alignment:
| Q |
1 |
ttgacagaaagatacaaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatattctatata |
100 |
Q |
| |
|
||||||||| || ||||| ||||||||||| ||||| |||||||| | ||||||||||||||| |||||||||||||||||||| |||| |||||| |
|
|
| T |
31256356 |
ttgacagaatcattcaagggagtggattaagcgggccaattccttccgaaatttcacttttgagtaacttaactgacttgtatgtgcagtattttatata |
31256257 |
T |
|
| Q |
101 |
ctg---aagcaatggtagaaatttaaccttcattttaattatgtttccttagctttgattcaaatgtgatattcaggagaattagtgatctgagtggatc |
197 |
Q |
| |
|
||| ||| || | | ||||||| | ||| | |||||||| |||| ||||||| |||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
31256256 |
ctgataaagtaaggattgaaattt---cgtca--atggttatgtttacttatctttgatataaatgtgatattcaggagaattagtgatttgaatggatt |
31256162 |
T |
|
| Q |
198 |
tgaatatgcacctttgccg |
216 |
Q |
| |
|
|||||||| ||||||||| |
|
|
| T |
31256161 |
agaatatgcccctttgccg |
31256143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 93
Target Start/End: Complemental strand, 36213481 - 36213404
Alignment:
| Q |
16 |
aaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatgatatt |
93 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
36213481 |
aagggagtggattaagtgggccaattccttctggaatttcaaaattggaaaaattaactgacttgtatgtatgatatt |
36213404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 20997725 - 20997799
Alignment:
| Q |
15 |
caaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatga |
89 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||||| |
|
|
| T |
20997725 |
caagggagtggtttgagtgggccaattccttctggaatttcacttttgaagaacctcactgacttgtaagtatga |
20997799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 21013638 - 21013564
Alignment:
| Q |
15 |
caaggaagtggattaagtgggccgattccttctggaatttcacttttgagaaacttaactgacttgtatgtatga |
89 |
Q |
| |
|
||||| ||||| || |||||||| ||||||||||||||||||||||||| ||| | ||||||||||| |||||| |
|
|
| T |
21013638 |
caagggagtggtttgagtgggccaattccttctggaatttcacttttgaagaacctcactgacttgtaagtatga |
21013564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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