View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_29 (Length: 267)
Name: NF4464_low_29
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 44017182 - 44017417
Alignment:
| Q |
20 |
ggtgaaggtgaaggtaataaaagactactagtttaggagagcacatgcatgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaa |
119 |
Q |
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| T |
44017182 |
ggtgaaggtgaaggtgataaaagactactagtttaggagagcacatgcatgatgcttaagtttcacacaaacgttttaaacacaagcatgtgaaacaaaa |
44017281 |
T |
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| Q |
120 |
agagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacat |
219 |
Q |
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| T |
44017282 |
agagatagtgtcaagtagtatgtttaagaagggagataatagagatgagagaatggtcaaaaaggaatggacaaagctttctatttgttatcttagacat |
44017381 |
T |
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| Q |
220 |
ataccagaatgtaccttaactatctttgtctctgct |
255 |
Q |
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| T |
44017382 |
ataccagaatgtaccttaactatctttgtctctgct |
44017417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 187
Target Start/End: Complemental strand, 31037218 - 31037093
Alignment:
| Q |
67 |
catgatgcttaagtttcacacaaacgttttaaacaaaagcatgtgaaacaaaaagagatagtgtcaagta---gtatgtttaagaagggagataatagag |
163 |
Q |
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||||||||||| |||||||||||| ||||| ||| || |||||| | ||| |||||| ||||||||| ||| |||||||||| ||| ||||||| |
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| T |
31037218 |
catgatgcttaggtttcacacaaatgttttcgacactagaatgtgacatgaaaggagatattgtcaagtattgttatctttaagaaggaagaaaatagag |
31037119 |
T |
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| Q |
164 |
at--gagagaatggtcaaaaaggaat |
187 |
Q |
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| T |
31037118 |
ctgagagagaatgttcaaaaaggaat |
31037093 |
T |
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