View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_30 (Length: 266)
Name: NF4464_low_30
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 3432269 - 3432023
Alignment:
| Q |
1 |
ctgggaacatttttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagacggggactcctctcttgtctatgggctgattttgag |
100 |
Q |
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| T |
3432269 |
ctgggaacatttttgatttatcgtaggattcaccaacatgcttgccttctgaggatcttcaagatgaggactcctctcttgtctatgggctgattttgag |
3432170 |
T |
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| Q |
101 |
agagtcaacatcgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacacttttgcacttatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3432169 |
agagtcaacatcgctttatgtcattattatagtttttaaatgttttgaggtgtataaaaaagatttggacatattttaatgtcacacttttgcact--tg |
3432072 |
T |
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| Q |
201 |
tgtctatatatctcacgactatcaaaggatcttcacccgactatcaaag |
249 |
Q |
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| T |
3432071 |
tgtctatatatctcacgactatcaaaggatcttcacccgactatcaaag |
3432023 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 164
Target Start/End: Complemental strand, 41377960 - 41377919
Alignment:
| Q |
123 |
attattatagtttttaaatgttttgaggtgtataaaaaagat |
164 |
Q |
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| T |
41377960 |
attactatagtttttaaatgttgtgaggtgtataaaaaagat |
41377919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 36973835 - 36973882
Alignment:
| Q |
123 |
attattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
170 |
Q |
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| T |
36973835 |
attactatagtttttaaatgatttgtggtgtatataaaagatttggac |
36973882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 44414957 - 44415004
Alignment:
| Q |
122 |
cattattatagtttttaaatgttttgaggtgtataaaaaagatttggac |
170 |
Q |
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||||| || ||||||||||||||||| ||||||| |||||||||||||| |
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| T |
44414957 |
cattactaaagtttttaaatgttttggggtgtat-aaaaagatttggac |
44415004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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