View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_low_31 (Length: 262)

Name: NF4464_low_31
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_low_31
NF4464_low_31
[»] chr4 (7 HSPs)
chr4 (160-252)||(10255102-10255194)
chr4 (29-129)||(10256006-10256107)
chr4 (90-154)||(10255941-10256005)
chr4 (164-220)||(10265454-10265510)
chr4 (20-81)||(10284537-10284598)
chr4 (164-220)||(10284460-10284516)
chr4 (164-196)||(10361123-10361155)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 10255194 - 10255102
Alignment:
Q  160 atgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataatttcgaatacaaaagcacactattttctttctctg 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10255194 atgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataatttcgaatagaaaagcacactattttctttctctg 10255102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 10256107 - 10256006
Alignment:
Q  29 tcacaggcaa-ttaacttggttagttatttatgttgagaacctgttgaagcaaaccaaaaattagcgattctggttatagtcaccactgttgtcatagtc 127  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||||||||  ||||||||||||||||    
T  10256107 tcacaggcaaattaacttggttagttatttatgttgagaacctgttgaagcaaaccaaaaagtagggagtctcgttatagtcgtcactgttgtcatagtc 10256008  T
Q  128 aa 129  Q
    ||    
T  10256007 aa 10256006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 90 - 154
Target Start/End: Complemental strand, 10256005 - 10255941
Alignment:
Q  90 tagcgattctggttatagtcaccactgttgtcatagtcaacaaggttgaaacttcctaaagaata 154  Q
    |||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  10256005 tagcgagtctcgttatagtcgtcactgttgtcatagtcaacaaggttgaaacttcctaaagaata 10255941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 10265510 - 10265454
Alignment:
Q  164 atcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataattt 220  Q
    ||||||||||| ||||||||||||||||| | ||||||||| | |||||||||||||    
T  10265510 atcacgatttattcaaccaacacaacatcaagatcatagaatttttattcataattt 10265454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 10284598 - 10284537
Alignment:
Q  20 ttactaatatcacaggcaattaacttggttagttatttatgttgagaacctgttgaagcaaa 81  Q
    |||||| ||||||| | |||||||||| ||| ||||||||||||||||| | ||||||||||    
T  10284598 ttactagtatcacaagaaattaacttgattaattatttatgttgagaacttattgaagcaaa 10284537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 10284516 - 10284460
Alignment:
Q  164 atcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataattt 220  Q
    ||||||||||| |||||||||| |||||| | ||||||||| | |||||||||||||    
T  10284516 atcacgatttattcaaccaacaaaacatcaagatcatagaatttttattcataattt 10284460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 10361155 - 10361123
Alignment:
Q  164 atcacgatttagtcaaccaacacaacatctaaa 196  Q
    ||||||||||||| |||||||||||||||||||    
T  10361155 atcacgatttagtgaaccaacacaacatctaaa 10361123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University