View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_35 (Length: 252)
Name: NF4464_low_35
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_35 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 14415143 - 14415384
Alignment:
| Q |
11 |
cagagactatgtgattgttcatatttgaacataattcaaatccataccttttggtatagtctcgctcttactttgaattattatgtgttagagatgtcaa |
110 |
Q |
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| T |
14415143 |
cagagactatgtgattgttcatatttgaacataattcaaatccataccttttggtatagtctcgctcttactttgaattattatgtgttagtgatgtcaa |
14415242 |
T |
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| Q |
111 |
atttaataatcaatttaagagatcgaagaaaacaaaattcgcatgttnnnnnnngacaatgattgttgaaatttagaaatgcttacaacaacgaagcagt |
210 |
Q |
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| T |
14415243 |
atttaataatcaatttaagagatcgaagaagacaaaattcgcatgttaaaaaaagacaatgattgttgaaatttagaaatgcttacaacaacgaagcagt |
14415342 |
T |
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| Q |
211 |
cgtgaaattgaagacgaatgatgttagcaattgcgtttggat |
252 |
Q |
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| T |
14415343 |
cgtgaaattgaagacgaataatgttagcaattgcgtttggat |
14415384 |
T |
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