View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_39 (Length: 242)
Name: NF4464_low_39
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 51318819 - 51318594
Alignment:
| Q |
1 |
ctttaattttaattacttgcagaaagtggagaagatagtacctcttacattaaaaagcatggaaaataaaaatggtatgaccccaacagaaatattttac |
100 |
Q |
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| T |
51318819 |
ctttaattttaattacttgcagaaagtggagaagatagtacctcccacattaaaaagcatggaaaataaaaatggtatgaccccaacagaaatattttac |
51318720 |
T |
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| Q |
101 |
aaggaacataaagaatcatatgagaaagctgtaactgaagtgaatggaactgcaaatacttttatagttgtggcagctttgtttctatcactaagcataa |
200 |
Q |
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| T |
51318719 |
aaggaacataaagaatcatatgagaaagctgtaactgaagtgaatggaactgcaaatacttttatagttgtggcagctttgtttctatcactaagcataa |
51318620 |
T |
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| Q |
201 |
ctgcagctctatcaattcgtaataat |
226 |
Q |
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| T |
51318619 |
ctgcagctctatcaattcgtaataat |
51318594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 168
Target Start/End: Complemental strand, 51342419 - 51342258
Alignment:
| Q |
7 |
ttttaattacttgcagaaagtggagaagatagtacctcttacattaaaaagcatggaaaataaaaatggtatgaccccaacagaaatattttacaaggaa |
106 |
Q |
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|||||| | ||||||| |||||||||||||| |||| |||||| |||| |||| ||||| | ||||||||||||||| |||| | ||||| | || |
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| T |
51342419 |
ttttaactgcttgcaggaagtggagaagataactcctcctacattcaaaaacatgaaaaatcatgatggtatgaccccaatagaattgttttatgaaaaa |
51342320 |
T |
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| Q |
107 |
cataaagaatcatatgagaaagctgtaactgaagtgaatggaactgcaaatacttttatagt |
168 |
Q |
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| T |
51342319 |
cacaaacgatcgtctgaaaaagctgtagaagaagtgaatggaatatcaaatacttttatagt |
51342258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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