View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_4 (Length: 565)
Name: NF4464_low_4
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 475; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 6 - 549
Target Start/End: Original strand, 27001932 - 27002474
Alignment:
| Q |
6 |
gtcgaagaatattaatgacattgtataatgtgagatctatatttgtaagacagaaagctaatactcccctgggagttataaatgtaaaacctctcttgat |
105 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
27001932 |
gtcgaataatattaatgacattgtataatgtgagatctatatttgtaagacagaaagctaatactcccctgggagttatcaatgtaaaacctctcttgat |
27002031 |
T |
|
| Q |
106 |
aacaacttgatcttttaggagaactggatcttggacatgatgcagagctaccaaatagttaaagagttaggtgcttatcataccccattctacctaaata |
205 |
Q |
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| T |
27002032 |
aacaacttgatcttttaggagaactggatcttggacatgatgcagagctaccaaatagttaa-gagttaggtgcttatcgtaccccattctacctaaata |
27002130 |
T |
|
| Q |
206 |
agtaggcttataccnnnnnnnagcgcctcaagtgcaaaggctatttcataatgaaacttgttaaaagatataaaattactatggaacctatgtgaaacat |
305 |
Q |
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| T |
27002131 |
agtaggtttatacctttttt-agcgcctcaagtgcaaaggctatttcataatgaaacttgtttaaagatataaaattactatggaacctatgtgaaacat |
27002229 |
T |
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| Q |
306 |
attaggcttttcaagagacttggtctttgatactcatttttatgctaaaa-tcttaggccaagtaatggtctagtagaatgagtagatccaactaaataa |
404 |
Q |
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| T |
27002230 |
attaggcttttcaagaggcttggtctttgatactcatttttatgctaaaaatcttaggccaagtaatggtctagtagaatgagtagatccaactaaataa |
27002329 |
T |
|
| Q |
405 |
gactaccaacataagaacaataaaatactaaaatttctaatatttcaatctaacatgaccataccagcaatgttccctccaggccaacagttgcaggtgt |
504 |
Q |
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| T |
27002330 |
gactagcaacataagaacaataaaatactaaaatttctaatatttcaatctaacatgaccataccagcaatgttccctccaggccaacagttgcaggtgt |
27002429 |
T |
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| Q |
505 |
gaccactagcgctaaaaagtatggaatcagtatcttatgcatctg |
549 |
Q |
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| T |
27002430 |
gaccactagcgctaaaaagtatggaatcagtatcttatgcatctg |
27002474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 99 - 549
Target Start/End: Original strand, 26987268 - 26987707
Alignment:
| Q |
99 |
tcttgataacaacttgatcttttaggagaactggatcttggacatgatgcagagctaccaaatagttaaagagttaggtgcttatcataccccattctac |
198 |
Q |
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| T |
26987268 |
tcttgttaacaactttatcttttaggagaattg-atcttggaaatgatgcagagctactaaatagttaagg-gttaggtgcttatcataccc-attctac |
26987364 |
T |
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| Q |
199 |
ctaaataagtaggcttataccnnnnnnnagcgcctcaagtgcaaaggctatttcataatgaaacttgttaaaagatataaaattactatggaacctatgt |
298 |
Q |
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| T |
26987365 |
ctaaataagtaggcttactcctttttt-agcacctcaatcgcaaaggctatttcataatgaaacgtgttaaaagatataaaatcactatggaacctatgt |
26987463 |
T |
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| Q |
299 |
gaaacatattaggcttttcaagagacttggtctttgatactcatttttatgctaaaatcttaggccaagtaatggtctagtagaatgagta--gatccaa |
396 |
Q |
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| T |
26987464 |
gaaacagattaggattttcaaggagcttggtctttgatattcatttttatgctaaaaatccaggtca------ggtctagtag---gagtaaagatccaa |
26987554 |
T |
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| Q |
397 |
ctaaataagactaccaacataagaacaataaaatactaaaatttctaatatttcaatctaacatgaccataccagcaatgttccctccaggccaacagtt |
496 |
Q |
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|| |||||||||||| ||||||||||| ||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
26987555 |
ctgaataagactacccacataagaacactaaaataataaaattcctaatattccaatctaacatgagcataccagcaatgttccctccaggccaactgtt |
26987654 |
T |
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| Q |
497 |
gcaggtgtgaccactagcgctaaaaagtatggaatcagtatcttatgcatctg |
549 |
Q |
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||||||||||||| ||| |||||||||||||| ||||| ||| |||||||||| |
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| T |
26987655 |
gcaggtgtgaccagtagtgctaaaaagtatggtatcagaatcctatgcatctg |
26987707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 451 - 549
Target Start/End: Complemental strand, 26979913 - 26979815
Alignment:
| Q |
451 |
aatctaacatgaccataccagcaatgttccctccaggccaacagttgcaggtgtgaccactagcgctaaaaagtatggaatcagtatcttatgcatctg |
549 |
Q |
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|||||||||||| |||||||||||||||||||||||||| | |||||||||||| |||||||| ||||||||||| |||||||| ||| |||||||||| |
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| T |
26979913 |
aatctaacatgagcataccagcaatgttccctccaggccgatagttgcaggtgtcaccactagtgctaaaaagtacggaatcaggatcctatgcatctg |
26979815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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