View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_43 (Length: 239)
Name: NF4464_low_43
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_43 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 45287372 - 45287597
Alignment:
| Q |
17 |
acctatagcccc-atgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctca |
114 |
Q |
| |
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|||||||||||| | |||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
45287372 |
acctatagcccccaagtttgacgaatatgaaattttggacttaaattgtatacttatagccccccatgtttagggaatataaaattttaaactatcctca |
45287471 |
T |
|
| Q |
115 |
aatacttatagcccc-atgtataagacatattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagattaaaa |
213 |
Q |
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|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
45287472 |
gatgcttatagcccccatgtataagacatattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagactgaaa |
45287571 |
T |
|
| Q |
214 |
atacactatccagaggaagattttgt |
239 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
45287572 |
atacactattcagaggaagattttgt |
45287597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 238
Target Start/End: Original strand, 45287713 - 45287862
Alignment:
| Q |
87 |
gggaatataaaattttaaactatcctcaaatacttatagccccatgtataagacatattgatttgtttgaggttagcattgaaaaata--gagtgtttgt |
184 |
Q |
| |
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|||||||||||||||| ||||| | |||||||||| || ||| ||||||| | |||||||||||||||||||||| |||| |||||| |||||||||| |
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| T |
45287713 |
gggaatataaaattttgaactaccatcaaatactt-taaacccttgtataaaaaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgt |
45287811 |
T |
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| Q |
185 |
atattattaatgagagtggaagattaaaaatacactatccagaggaagattttg |
238 |
Q |
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||||||| ||||||||||||| | |||||||| | |||| |||||||||||| |
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| T |
45287812 |
atattat---tgagagtggaagactgaaaatacattgtccataggaagattttg |
45287862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 31609424 - 31609197
Alignment:
| Q |
17 |
acctatagccccatgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctcaa |
115 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
31609424 |
acctacagccccatgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccc-atgtttagggaatataaaattttaaactatcctcaa |
31609326 |
T |
|
| Q |
116 |
atacttatagcccc-atgtataagaca----tattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaagatta |
210 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
31609325 |
atacttatagcccccatgtataagacaaacatattgatttgtttgagattagcattgaaaaatagagtgattgtatattattaatgagagtggaagactg |
31609226 |
T |
|
| Q |
211 |
aaaatacactatccagaggaagattttgt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31609225 |
aaaatacactatccagaggaagattttgt |
31609197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 1059003 - 1059162
Alignment:
| Q |
17 |
acctatagccccatgtttgaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||| ||| | |||||||||||| |||||| | |
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| T |
1059003 |
acctatagccccatgtttgaagaatatgaaatttaggacttaaatcaaatacttattatagcatcccatatttagagaaatataaaatttcaaactacca |
1059102 |
T |
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| Q |
112 |
tcaaatacttatagcccc-atgtataagacatattgatttgtttgaggttagcattgaaa |
170 |
Q |
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||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
1059103 |
tcaaatatttatagcccccatgtataggaaatattgatttgtttgaggttagcattgaaa |
1059162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 31609080 - 31608974
Alignment:
| Q |
88 |
ggaatataaaattttaaactatcctcaaatacttatagccccatgtataagacatattgatttgtttgaggttagcattgaaaaata--gagtgtttgta |
185 |
Q |
| |
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||||||||||||||||||||| | |||||||||||||| ||| ||||||||| |||||||||||||||||||||| |||| |||||| ||||||||||| |
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|
| T |
31609080 |
ggaatataaaattttaaactaccatcaaatacttatagacccttgtataagaaatattgatttgtttgaggttagtattgcaaaatacggagtgtttgta |
31608981 |
T |
|
| Q |
186 |
tattatt |
192 |
Q |
| |
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||||||| |
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| T |
31608980 |
tattatt |
31608974 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 12630467 - 12630688
Alignment:
| Q |
17 |
acctatagcccc-atgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccccatgttt-gggaatataaaattttaaactatcctca |
114 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
12630467 |
acctatagcccccatgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccccatgtttagggaatataaaattttaaattatcctca |
12630566 |
T |
|
| Q |
115 |
aatacttatag---ccccatgtataagac----atattgatttgtttgaggttagcattgaaaaatagagtgtttgtatattattaatgagagtggaaga |
207 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
12630567 |
aatacttatatagcccccatgtataagacagacatattgatttgtttgaggttagcattgaaatatagagtgtttgtatattattaatgagagtggaaga |
12630666 |
T |
|
| Q |
208 |
ttaaaaatacactatccagagg |
229 |
Q |
| |
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| ||||||||||||||||||| |
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| T |
12630667 |
ctgaaaatacactatccagagg |
12630688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 34029710 - 34029551
Alignment:
| Q |
17 |
acctatagccccatgtttgaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatcc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| ||||| ||| | |||||||||||| |||||| | |
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| T |
34029710 |
acctatagccccatgtttgaagaatatgaaatttaggacttaaatcaaatacttattatagcatcccatatttagagaaatataaaatttcaaactacca |
34029611 |
T |
|
| Q |
112 |
tcaaatacttatagcccc-atgtataagacatattgatttgtttgaggttagcattgaaa |
170 |
Q |
| |
|
||||||| |||||||||| ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34029610 |
tcaaatatttatagcccccatgtataggaaatattgatttgtttgaggttagcattgaaa |
34029551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 14938821 - 14938661
Alignment:
| Q |
17 |
acctatagcccc-atgtttgaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatc |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||| ||| | |||||||||||| |||||| | |
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| T |
14938821 |
acctatagcccccatgtttgaagaatatgaaatttaggacttaaatcaaatacttattatagcctcccatatttagagaaatataaaatttcaaactacc |
14938722 |
T |
|
| Q |
111 |
ctcaaatacttatagcccc-atgtataagacatattgatttgtttgaggttagcattgaaa |
170 |
Q |
| |
|
|||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
14938721 |
atcaaatacttatagcccccatgtataggaaatattgatttgtttgaggttagcattgaaa |
14938661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 72
Target Start/End: Complemental strand, 14938884 - 14938844
Alignment:
| Q |
32 |
tttgaagaatatgaaattttggacttaaatcgtatacttat |
72 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
14938884 |
tttgaagaatatgaaatttaggacttaaatcaaatacttat |
14938844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 34988031 - 34987871
Alignment:
| Q |
17 |
acctatagcccc-atgtttgaagaatatgaaattttggacttaaatcgtatacttat---agccccccatgtttggg--aatataaaattttaaactatc |
110 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||||||||||| |||||||| |||| ||||| ||| | |||||||||||| |||||| | |
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|
| T |
34988031 |
acctatagcccccatgtttgaagaatatgaaatttaggacttaaatcaaatacttattatagcctcccatatttagagaaatataaaatttcaaactacc |
34987932 |
T |
|
| Q |
111 |
ctcaaatacttatagcc-ccatgtataagacatattgatttgtttgaggttagcattgaaa |
170 |
Q |
| |
|
||||||| |||||||| ||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
34987931 |
atcaaataattatagccaccatgtataggaaatattgatttgtttgaggttagcattgaaa |
34987871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 150
Target Start/End: Original strand, 22792570 - 22792693
Alignment:
| Q |
27 |
ccatgtttgaagaatatgaaattttggacttaaatcgtatacttatagccccccatgtttgggaatataaaattttaaactatcctcaaatacttatagc |
126 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||| ||||||| || || |||||||||||||||| ||||| | ||||||||||||||| |
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| T |
22792570 |
ccatgtttgaagaatataaaattttggacttaaatcaaatacttttagccccatat-ttagggaatataaaattttgaactaccatcaaatacttatagc |
22792668 |
T |
|
| Q |
127 |
ccc-atgtataagacatattgattt |
150 |
Q |
| |
|
||| ||||| |||| |||||||||| |
|
|
| T |
22792669 |
ccctatgtagaagaaatattgattt |
22792693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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