View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_44 (Length: 238)
Name: NF4464_low_44
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_44 |
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| [»] chr4 (2 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 55954568 - 55954787
Alignment:
| Q |
19 |
tattttagttacctgcttacctgatttttgttaattccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgattttt |
118 |
Q |
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| T |
55954568 |
tattttagttacctgcttacctgatttttgttaattccggacatctgccactgagtcattttaactataatacatgtttcgtgatggtttcacgattttt |
55954667 |
T |
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| Q |
119 |
gttctcgtgataaataacatcgctgaatcaatgtggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatcc |
218 |
Q |
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| T |
55954668 |
gtcctcgtgataaataacatcgctgaatcaatgtggagttggaatcaaatacaggccatttctcctagccgctgcagctccaaaggcttcagtcatatcc |
55954767 |
T |
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| Q |
219 |
aagtcctctggtttcattcc |
238 |
Q |
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| T |
55954768 |
aagtcctctggtttcattcc |
55954787 |
T |
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Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 152 - 238
Target Start/End: Original strand, 55958254 - 55958340
Alignment:
| Q |
152 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattcc |
238 |
Q |
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| T |
55958254 |
tggagttggaatcaaatacaggttgtttctcctagccacaacagctccaaaggcttcagtcatatccaagtcctctggtttcattcc |
55958340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 52 - 238
Target Start/End: Original strand, 41795369 - 41795553
Alignment:
| Q |
52 |
attccggacatttgccactgagtcattttaactataatacatgtttcgtgatggtttcacgatttttgttctcgtgataaataacatcgctgaatcaatg |
151 |
Q |
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| T |
41795369 |
attccggacttttgccat--agtcattttaaccataacacatgcttcatgatggtttcacaaatttttccctcacgataaatagcgtcgctgaatcaatg |
41795466 |
T |
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| Q |
152 |
tggagttggaatcaaatacaggccatttcccctagccgctgcagctccaaaggcttcagtcatatccaagtcctctggtttcattcc |
238 |
Q |
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|||||| |||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| |||| ||||| |||||||||||||| |
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| T |
41795467 |
tggagtaggaatcaaatacaggccatttctcctagccgttgcagctcccaaggattcagtcttatctaagtcgtctggtttcattcc |
41795553 |
T |
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