View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4464_low_5 (Length: 475)
Name: NF4464_low_5
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4464_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 19 - 459
Target Start/End: Complemental strand, 41043388 - 41042948
Alignment:
| Q |
19 |
gaacattaaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaa |
118 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043388 |
gaacattaaaaagcaaatgccaaagggaaaaaaattaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaa |
41043289 |
T |
|
| Q |
119 |
gaacaaaacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttcaataatc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043288 |
gaacaaaacaagaacttgacattctcaggattaatttcgatggctggtgaaggtgaggaagtaaacacaagacctcctattgaggtagctttcaataatc |
41043189 |
T |
|
| Q |
219 |
taaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccctcaggagc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043188 |
taaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccctcaggagc |
41043089 |
T |
|
| Q |
319 |
tggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41043088 |
tggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactct |
41042989 |
T |
|
| Q |
419 |
tataagaaaattactggttttgtgccacaggatgatattgt |
459 |
Q |
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| T |
41042988 |
tataagaaaattactggttttgtgccacaggatgatattgt |
41042948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 23 - 459
Target Start/End: Original strand, 28087039 - 28087478
Alignment:
| Q |
23 |
attaaaaagcaaatgccaaagggnnnnnnnttaaacactcatagccaaattttaaggtatgcttatggtcaaattgagaaggagaaagctcagcaagaac |
122 |
Q |
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||||||||||||||||||||||| ||| | || || || ||||||||||| |||||||||||||| |||||||||||||||||||| ||||| |
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| T |
28087039 |
attaaaaagcaaatgccaaagggaaaaaatttacatacgcaaagtcaaattttaagatatgcttatggtcagattgagaaggagaaagctcaacaagaga |
28087138 |
T |
|
| Q |
123 |
aaaacaagaacttgacattctcaggattaatttcaatggctggtgaaggtgaggaag---taaacacaagacctcctattgaggtagctttcaataatct |
219 |
Q |
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||||||| |||||||| ||||||||| | |||||||||||| ||||| |||||| | | || | || ||| || |||||||||||||| || | |
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| T |
28087139 |
aaaacaataacttgaccttctcaggagtgatttcaatggcttctgaagttgaggaggatattaaatcgaggcctgagatcgaggtagctttcaaagatgt |
28087238 |
T |
|
| Q |
220 |
aaccctgacattgaagggtaaaaacaaacatatactgaggtgtgtgagtggtaaaatcatgcctggtcgagtttctgctgttatgggaccctcaggagct |
319 |
Q |
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|||||| || ||||| || |||| |||||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| |
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| T |
28087239 |
aacccttactttgaaagggaaaagaaaacatatactgaggtgtgtgacaggtaaaatcatgcccggtcgagtttcagctgtgatgggtccctcgggagct |
28087338 |
T |
|
| Q |
320 |
ggaaaaaccacatttctttcagctttggctggaaaagcaagaggatgcactatgtcaggctcaattctagttaatggaaaaaatgaatccattcactctt |
419 |
Q |
| |
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|| ||||| ||||||||||| || |||| || ||| |||||||||||||||| ||||||||||| | || ||||||| | |||||||||||||| || |
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| T |
28087339 |
ggcaaaactacatttctttctgccctggcagggaaaataagaggatgcactatgacaggctcaatttttgtcaatggaagacctgaatccattcactgtt |
28087438 |
T |
|
| Q |
420 |
ataagaaaattactggttttgtgccacaggatgatattgt |
459 |
Q |
| |
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|| |||||||| ||| | ||||||||| ||||||||||| |
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| T |
28087439 |
atcagaaaattgttggatatgtgccacaagatgatattgt |
28087478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 358
Target Start/End: Original strand, 21492320 - 21492394
Alignment:
| Q |
284 |
ggtcgagtttctgctgttatgggaccctcaggagctggaaaaaccacatttctttcagctttggctggaaaagca |
358 |
Q |
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|||||||||||||| || |||||||| || || ||||| || || ||||||||||| ||||| ||||||||||| |
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| T |
21492320 |
ggtcgagtttctgcagtcatgggaccatctggggctggtaagacaacatttctttctgctttaactggaaaagca |
21492394 |
T |
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