View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4464_low_7 (Length: 468)

Name: NF4464_low_7
Description: NF4464
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4464_low_7
NF4464_low_7
[»] chr1 (3 HSPs)
chr1 (9-451)||(52092654-52093095)
chr1 (41-451)||(52082489-52082893)
chr1 (135-243)||(19468488-19468596)
[»] chr8 (6 HSPs)
chr8 (134-230)||(27922509-27922605)
chr8 (140-230)||(17636403-17636493)
chr8 (140-230)||(18315275-18315365)
chr8 (134-230)||(32151302-32151398)
chr8 (134-228)||(17628018-17628112)
chr8 (188-228)||(21235613-21235653)
[»] chr5 (4 HSPs)
chr5 (138-243)||(41889543-41889648)
chr5 (134-230)||(32267476-32267572)
chr5 (135-225)||(41901542-41901632)
chr5 (134-207)||(20478107-20478180)
[»] chr4 (22 HSPs)
chr4 (134-311)||(1548344-1548522)
chr4 (134-230)||(8187093-8187189)
chr4 (43-211)||(1754429-1754589)
chr4 (137-230)||(7307864-7307957)
chr4 (134-230)||(546914-547010)
chr4 (134-230)||(1524488-1524584)
chr4 (140-243)||(532196-532299)
chr4 (261-320)||(1754611-1754670)
chr4 (134-228)||(553480-553574)
chr4 (134-231)||(3438567-3438663)
chr4 (145-209)||(640927-640991)
chr4 (134-230)||(1513409-1513505)
chr4 (41-157)||(6006235-6006351)
chr4 (134-230)||(8184032-8184128)
chr4 (261-311)||(1552685-1552735)
chr4 (134-228)||(1552771-1552865)
chr4 (164-230)||(12121459-12121525)
chr4 (134-203)||(558499-558568)
chr4 (134-243)||(55908717-55908826)
chr4 (134-202)||(1508033-1508101)
chr4 (41-97)||(1528338-1528394)
chr4 (134-230)||(1537769-1537865)
[»] chr3 (10 HSPs)
chr3 (134-316)||(51113694-51113879)
chr3 (134-230)||(51120895-51120991)
chr3 (79-226)||(33714861-33715008)
chr3 (79-217)||(33708989-33709127)
chr3 (134-207)||(13470757-13470830)
chr3 (148-215)||(37580837-37580904)
chr3 (145-215)||(37587571-37587641)
chr3 (29-101)||(514859-514931)
chr3 (395-443)||(27005567-27005615)
chr3 (420-452)||(36810811-36810843)
[»] chr6 (17 HSPs)
chr6 (134-230)||(6432162-6432258)
chr6 (132-231)||(6423216-6423315)
chr6 (139-208)||(6585261-6585330)
chr6 (132-207)||(6426510-6426585)
chr6 (135-226)||(14802338-14802429)
chr6 (134-207)||(6394865-6394938)
chr6 (137-230)||(6410010-6410103)
chr6 (137-207)||(10579761-10579831)
chr6 (134-202)||(6402861-6402929)
chr6 (134-218)||(6594620-6594704)
chr6 (134-218)||(14820694-14820778)
chr6 (140-207)||(6415973-6416040)
chr6 (134-207)||(6596953-6597026)
chr6 (138-207)||(7119162-7119231)
chr6 (138-207)||(7131640-7131709)
chr6 (147-207)||(6589348-6589408)
chr6 (188-228)||(12102321-12102361)
[»] chr2 (5 HSPs)
chr2 (148-230)||(32785774-32785856)
chr2 (140-198)||(44575529-44575587)
chr2 (134-226)||(45245091-45245183)
chr2 (252-318)||(43277371-43277440)
chr2 (134-243)||(1037653-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (134-205)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (134-207)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 52092654 - 52093095
Alignment:
Q  9 acatcatcacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcac 108  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  52092654 acatcaacacacacctcacgacaacctcgtatatttatctctctcaatcgtgtgcagtttt-tactacgtgcctcactcctttctctgtgatatgatcac 52092752  T
Q  109 accgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaa 208  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  52092753 accgttccaagtccaattgtagtagcccacaaaaactctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaa 52092852  T
Q  209 tttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaatacct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092853 tttggaaacttgaaagttcattgaaagtagattcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaatacct 52092952  T
Q  309 tcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaacc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092953 tcggatatgcaatagcaatggcaatatctcattctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaacc 52093052  T
Q  409 gtggattgcctgccaaatggagagacttcacttgagggtatac 451  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  52093053 gtggattgcctgccaaatggagagacttcacttgagggtatac 52093095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 41 - 451
Target Start/End: Original strand, 52082489 - 52082893
Alignment:
Q  41 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 140  Q
    |||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  52082489 atttatctctctcagtcgtgtgcagttttctactacgtgcccgactcctttctctgtgatatgatcacaccgttccaagtccaattgtagtatcccacaa 52082588  T
Q  141 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082589 caactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtagat 52082688  T
Q  241 tcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaatagcaatggcaatatctcat 340  Q
    ||| |||||| |||||||||| || ||| ||| ||||||||||| |||||||||||||||| ||||| || |||||||||||||||||||||||          
T  52082689 tcagtgttgaacaagatctcatgtccaagtgaataattttacaatatcttaaaacttcaacgataccgtcagatatgcaatagcaatggcaata------ 52082782  T
Q  341 tctcaggtcaagcccctgcaggtttgggaaaagagaaggcaacattttgatgctttcatttttcaaccgtggattgcctgccaaatggagagacttcact 440  Q
    ||||||||||||| | |||| |||||| |||||||||| ||||||||||||||||||||| ||||||  ||||||||  |||||||||||||||||||||    
T  52082783 tctcaggtcaagcacttgcaagtttggaaaaagagaagccaacattttgatgctttcattcttcaacaatggattgcgagccaaatggagagacttcact 52082882  T
Q  441 tgagggtatac 451  Q
    |||||||||||    
T  52082883 tgagggtatac 52082893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 135 - 243
Target Start/End: Complemental strand, 19468596 - 19468488
Alignment:
Q  135 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaa 234  Q
    ||||||||  |||||||||||||||| | ||||||||||||||  ||||| | |||||| |||||||||||||  |||| ||||  |||||||| |  ||    
T  19468596 ccacaacagttctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaa 19468497  T
Q  235 gtagattca 243  Q
    |||||||||    
T  19468496 gtagattca 19468488  T

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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 27922509 - 27922605
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||||||||||||| ||| | || |||||||||||  ||||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  27922509 cccacaacaactctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 17636493 - 17636403
Alignment:
Q  140 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    |||||||||||||||||||||||||| |||||| |||| |  ||| | |||||||||||||||||||||||||| ||||| ||||||||||    
T  17636493 acaactctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcatt 17636403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 230
Target Start/End: Complemental strand, 18315365 - 18315275
Alignment:
Q  140 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||||||||||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| ||||||||||    
T  18315365 acaactctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcatt 18315275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 32151302 - 32151398
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||| ||||||||||||||||||||| | ||||||||||||||   ||||   ||||||||| ||||||||||  ||||||||||  |||||||||    
T  32151302 cccactacaactctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcatt 32151398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 17628112 - 17628018
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 228  Q
    |||| ||||| ||||||||||||||   | || || |||||||| | | || | |||||||||||||||||||||||| |||| || ||||||||    
T  17628112 cccaaaacaattctttgagatcacacggagtgctttatcatcaactctagtatgtgacaagttcaacacctccaatttagaaagtttaaagttca 17628018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 21235613 - 21235653
Alignment:
Q  188 tgacaagttcaacacctccaatttggaaacttgaaagttca 228  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  21235613 tgacaagttcaacacctccagtttgggaacttcaaagttca 21235653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 41889648 - 41889543
Alignment:
Q  138 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagta 237  Q
    ||||||||||||||||||  ||| | |||||||||||||| |||||| | ||| |||||||||||||||||||||| ||||| ||||||||||  |||||    
T  41889648 caacaactctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagta 41889549  T
Q  238 gattca 243  Q
    | ||||    
T  41889548 gcttca 41889543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 32267476 - 32267572
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||||||||||||| ||| | || ||||||||||| | |||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  32267476 cccacaacaactctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt 32267572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 41901632 - 41901542
Alignment:
Q  135 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagt 225  Q
    |||||||||||||||||||||| ||| | || ||||||||||| |||||| | |||||||||||||||||||| ||||| ||||| |||||    
T  41901632 ccacaacaactctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 20478180 - 20478107
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||||||| || ||||||||||| | |||||||| |||||||  ||||| | ||||||||||||||||||||    
T  20478180 cccacaacaattccttgagatcacagataatgtttcgtcatcaacatttgtatatgacaagttcaacacctcca 20478107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 134 - 311
Target Start/End: Complemental strand, 1548522 - 1548344
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca-ttga 232  Q
    ||||||||||||||||||||||||||  | |||||||||||||||  |||| | |||||||||||||||||||| ||||| || || |||||||| |  |    
T  1548522 cccacaacaactctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 1548423  T
Q  233 aagtagattcaatgtt-gaccaagatctcaagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcg 311  Q
    |||||| |||| | ||  || | || || |||||||| ||  |||| |||||||||||||||||||||  ||||||||||    
T  1548422 aagtagcttcacttttaaactacgagct-aagttcaactgtctaatcttacaacatcttaaaacttcacaaataccttcg 1548344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 8187189 - 8187093
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    |||||||||||||||||| ||  |||| | ||||| |||||||| | |||| | |||||||||||||||||||| |||||||| || ||||||||||    
T  8187189 cccacaacaactctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcatt 8187093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 43 - 211
Target Start/End: Original strand, 1754429 - 1754589
Alignment:
Q  43 ttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaaca 142  Q
    |||||||| |||  |||||||| ||||||||||| ||| ||||||||||||||||||||| || |||   ||| || ||||| || ||||  ||| | ||    
T  1754429 ttatctctttcaggcgtgtgcatttttctactacttgcttcactcctttctctgtgatattataacatttttctaaatccaattgcagtagtccagagca 1754528  T
Q  143 actctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaattt 211  Q
    ||||||||||||||  ||        |||| | |||||||||||| |||||||||||||||||||||||    
T  1754529 actctttgagatcatgta--------catccttaatttttgtcttcgacaagttcaacacctccaattt 1754589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 7307864 - 7307957
Alignment:
Q  137 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    |||||||||||||||||||| |   | || ||||||||||| || ||| | |||||||||||| ||||||||||||| ||||| ||||||||||    
T  7307864 acaacaactctttgagatcatacgtagtgcttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 546914 - 547010
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||||||||||||||||| | |||||||||||  |   ||||   ||||||||||| |||||||||||| | ||||| ||||||||||    
T  546914 cccacaacaactctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcatt 547010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 1524584 - 1524488
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||| |||||||| |||||||| ||| | ||||||||||||||   ||||   |||||| |||||||||||||| |||| ||||| ||||||||||    
T  1524584 cccacgacaactctgtgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcatt 1524488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 243
Target Start/End: Original strand, 532196 - 532299
Alignment:
Q  140 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaaagtaga 239  Q
    |||| |||||||| ||||||| |   ||||||||||||| ||||| | |||||||||||||||||| |  ||||  |||| ||||||||||  |||||||    
T  532196 acaattctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtaga 532295  T
Q  240 ttca 243  Q
    ||||    
T  532296 ttca 532299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 1754611 - 1754670
Alignment:
Q  261 aagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcggatatgcaa 320  Q
    |||||||| || ||||||||| ||||||||||||||||||| |||||||  |||||||||    
T  1754611 aagttcaattgtgtaattttagaacatcttaaaacttcaacgatacctttagatatgcaa 1754670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 553480 - 553574
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 228  Q
    |||| ||||||||||||| |||||||  | || ||||||||||| | ||||   |||||||||||||||||||| ||||  ||||| ||||||||    
T  553480 cccagaacaactctttgaaatcacattaagtgcttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttca 553574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 3438663 - 3438567
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 231  Q
    ||||||||||||||||||||| ||||  | | ||| |||||||| | |||| | ||||||| |||| ||||||||||| ||||| | |||||||||||    
T  3438663 cccacaacaactctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattg 3438567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 145 - 209
Target Start/End: Original strand, 640927 - 640991
Alignment:
Q  145 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaat 209  Q
    |||||||| |||| || | ||||||||||||||  ||||| | ||||||||||||||||||||||    
T  640927 tctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaat 640991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 1513505 - 1513409
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||| ||||| ||||||||| || || | ||||||||||||||  |||||   ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1513505 cccacgacaacactttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1513409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 41 - 157
Target Start/End: Original strand, 6006235 - 6006351
Alignment:
Q  41 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaa 140  Q
    |||||||||||||||| || ||||||||||||| || ||| ||||||| |||| ||||| || || ||| ||| |||| || |  || |||| |||| |     
T  6006235 atttatctctctcaattgtttgcagttttctacgacttgcatcactcccttctttgtgacatcataacaacgtcccaaatcaagttgcagtagcccaaag 6006334  T
Q  141 caactctttgagatcac 157  Q
    |||||| ||||||||||    
T  6006335 caactcattgagatcac 6006351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 8184128 - 8184032
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    |||||||||||||||||||||  |||| | || |  |||||||| | |||| | |||||||||||||||||| | ||| | ||||| ||||||||||    
T  8184128 cccacaacaactctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcatt 8184032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 261 - 311
Target Start/End: Complemental strand, 1552735 - 1552685
Alignment:
Q  261 aagttcaaatgagtaattttacaacatcttaaaacttcaacaataccttcg 311  Q
    |||||||||||  |||| |||||||||||||||||||||  ||||||||||    
T  1552735 aagttcaaatgtctaatcttacaacatcttaaaacttcacaaataccttcg 1552685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 1552865 - 1552771
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttca 228  Q
    ||||| |||| ||||||| |||||||  | ||||||||||| ||| ||||| | |||||| |||||||| |||| ||||| || || ||||||||    
T  1552865 cccacgacaattctttgatatcacattgagtgtttcatcattaatatttgtatgtgacaaattcaacacttccagtttgggaatttcaaagttca 1552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 230
Target Start/End: Complemental strand, 12121525 - 12121459
Alignment:
Q  164 tgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  12121525 tgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 12121459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 203
Target Start/End: Original strand, 558499 - 558568
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacc 203  Q
    ||||| ||||||||||||||||||||  | || |||||||||||| | |||   ||||||||||||||||    
T  558499 cccacgacaactctttgagatcacatggagtgcttcatcatcaatatatgttaatgacaagttcaacacc 558568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 55908826 - 55908717
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 233  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||  | ||||| |||||| |||  |    
T  55908826 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattcta 55908727  T
Q  234 agtagattca 243  Q
    ||||| ||||    
T  55908726 agtagtttca 55908717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 202
Target Start/End: Complemental strand, 1508101 - 1508033
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 202  Q
    ||||| ||||| ||||||||| ||| ||| ||||||||||||||  || || | |||||||||||||||    
T  1508101 cccacgacaacactttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 1528394 - 1528338
Alignment:
Q  41 atttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgt 97  Q
    |||||||||||||| | |||||||||||||||| || ||| | ||||| ||||||||    
T  1528394 atttatctctctcagttgtgtgcagttttctacaacttgcatgactccattctctgt 1528338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 1537865 - 1537769
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||| ||||| ||||||||| ||| ||| |||||  |||| ||  ||||| | ||||||||||||||| || | ||||| ||||| ||||||||||    
T  1537865 cccacgacaacactttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcatt 1537769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 134 - 316
Target Start/End: Complemental strand, 51113879 - 51113694
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 233  Q
    ||||||||||||||| ||||||||||| | ||||||||||||||   |||| ||||||||||  |||||||||| ||||| | ||| ||||||||||  |    
T  51113879 cccacaacaactcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T
Q  234 agtagattcaatgttgaccaagatctcaagttcaaatgagtaattttacaacatc---ttaaaacttcaacaataccttcggatat 316  Q
    ||||| |||| | |||| ||  |    || ||||||||  |||||||||||||||   ||||||||| |  |||||||||||||||    
T  51113779 agtagcttcagttttgaacagtaagctaatttcaaatgcctaattttacaacatctctttaaaacttgacaaataccttcggatat 51113694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Complemental strand, 51120991 - 51120895
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||| ||||||||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  51120991 cccacgacaactctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 51120895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 33715008 - 33714861
Alignment:
Q  79 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 178  Q
    |||||||||| ||||| |||| ||||| |||   ||||| ||||| |||||| | || |   ||||||||||| ||| |||||||||   ||||||||||    
T  33715008 gcctcactcccttctccgtgacatgatgacaatcttccaggtccagatgtagaagccgagggcaactctttgaaatcgcatacaatgcgccatcatcaat 33714909  T
Q  179 ttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 226  Q
    | |||  ||||||||||||| |||||||| ||||||||||| ||||||    
T  33714908 tcttgagtttgacaagttcagcacctccagtttggaaacttcaaagtt 33714861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 33709127 - 33708989
Alignment:
Q  79 gcctcactcctttctctgtgatatgatcacaccgttccaagtccaaatgtagtatcccacaacaactctttgagatcacatacaatgtttcatcatcaat 178  Q
    |||||||||| ||||| |||| ||||| ||| | ||||| ||||| |||||| | || |   ||||||||||||||  |||||||||   ||||||||||    
T  33709127 gcctcactcccttctccgtgacatgatgacatccttccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatgcaccatcatcaat 33709028  T
Q  179 ttttgtctttgacaagttcaacacctccaatttggaaac 217  Q
    | |||  | ||||||||||| |||||||| |||||||||    
T  33709027 tcttgagtctgacaagttcagcacctccagtttggaaac 33708989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 13470830 - 13470757
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||||||| |||||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  13470830 cccacaacaattctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctcca 13470757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 215
Target Start/End: Complemental strand, 37580904 - 37580837
Alignment:
Q  148 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 215  Q
    |||||||||||||||||  || |||||||||| |||  |||||||||||||| ||||| | |||||||    
T  37580904 ttgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcgagtttggaa 37580837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 215
Target Start/End: Complemental strand, 37587641 - 37587571
Alignment:
Q  145 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaa 215  Q
    ||||||||||| ||||||||  || |||||||||| |||  | |||||||||||| ||||||| |||||||    
T  37587641 tctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagtttggaa 37587571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 101
Target Start/End: Complemental strand, 514931 - 514859
Alignment:
Q  29 acaacctcgtatatttatctctctcaatcgtgtgcagttttctactacgtgcctcactcctttctctgtgata 101  Q
    |||||||| || ||| |||||||||| ||||||||||||||  || || ||| |||||||  |||||||||||    
T  514931 acaacctcttaaattgatctctctcagtcgtgtgcagtttttcaccacatgcttcactcccgtctctgtgata 514859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 443
Target Start/End: Complemental strand, 27005615 - 27005567
Alignment:
Q  395 ttcatttttcaaccgtggattgcctgccaaatggagagacttcacttga 443  Q
    ||||| |||||| ||||||||| | ||||||| ||||||||||||||||    
T  27005615 ttcatctttcaaacgtggattgtcagccaaatagagagacttcacttga 27005567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 420 - 452
Target Start/End: Complemental strand, 36810843 - 36810811
Alignment:
Q  420 gccaaatggagagacttcacttgagggtatact 452  Q
    |||||||||||||||||||||||| ||||||||    
T  36810843 gccaaatggagagacttcacttgatggtatact 36810811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 6432162 - 6432258
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    |||||||||| ||||| |||||||||| | ||||||||||||||   |||| ||||||||||||||||||| ||  |||| ||||| ||||||||||    
T  6432162 cccacaacaattctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcatt 6432258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 6423216 - 6423315
Alignment:
Q  132 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattg 231  Q
    |||||||||||||||||||||||| |||| | ||||| |||   || | |||| ||||||||||||||||||||||  |||| ||||| |||||||||||    
T  6423216 atcccacaacaactctttgagatcgcatagagtgttttatcgctaactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcattg 6423315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 6585330 - 6585261
Alignment:
Q  139 aacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaa 208  Q
    |||||||||||||||||||||| | ||||||||||||||  ||||| | |||||||||||| ||||||||    
T  6585330 aacaactctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaa 6585261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 6426510 - 6426585
Alignment:
Q  132 atcccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||| ||||||| ||||||||||| |||| || ||||||||||||||  |||| |||||||| |||||||||||||    
T  6426510 atccgacaacaattctttgagatcgcataaaaagtttcatcatcaatgcttgtgtttgacaaattcaacacctcca 6426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 14802338 - 14802429
Alignment:
Q  135 ccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 226  Q
    ||||||||| ||||||| |||||||| | ||||||||||||||  ||||| |||||||| |||||||| ||||  |||| ||||| ||||||    
T  14802338 ccacaacaattctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 6394865 - 6394938
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||||||| |||||||||||||| | |  |||||||||||||   |||| ||||||||||||||||||||||    
T  6394865 cccacaacaattctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctcca 6394938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 6410010 - 6410103
Alignment:
Q  137 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||| |||||||||||||||| |  |||||||||||||   |||| |||||| |||||||||||| ||  |||| ||||| ||||||||||    
T  6410010 acaacaattctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcatt 6410103  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Complemental strand, 10579831 - 10579761
Alignment:
Q  137 acaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    ||||||| |||||||||||  ||| | ||||| |||||||| |||||| | ||||||||||||||||||||    
T  10579831 acaacaattctttgagatcgaatagagtgttttatcatcaacttttgtatatgacaagttcaacacctcca 10579761  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 202
Target Start/End: Original strand, 6402861 - 6402929
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacac 202  Q
    ||||| |||| |||||||||||||||| | ||||||||||||||  || || | |||||||||||||||    
T  6402861 cccactacaattctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacac 6402929  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 6594704 - 6594620
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 218  Q
    |||||||||| ||||||||||||||   | ||| ||||||||||  | ||| |||||||||| ||||||||||| ||||| ||||    
T  6594704 cccacaacaattctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaact 6594620  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 14820694 - 14820778
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaact 218  Q
    |||||||||| |||| ||||||| ||| | |||||||| |||||  ||||| ||||| |||||||||||||| || |||| ||||    
T  14820694 cccacaacaattcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaact 14820778  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 6415973 - 6416040
Alignment:
Q  140 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||| |||||||||||||||| |  |||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6415973 acaattctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctcca 6416040  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 6597026 - 6596953
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||| ||||| ||||||||||  | || | ||||||||||||||  |||||  |||||||||||||||||||||    
T  6597026 cccagaacaattctttgagatagcgtagagtgtttcatcatcaacatttgtacttgacaagttcaacacctcca 6596953  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 7119162 - 7119231
Alignment:
Q  138 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7119162 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7119231  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 207
Target Start/End: Original strand, 7131640 - 7131709
Alignment:
Q  138 caacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||| |||| ||||||||||  | ||||||||||||||  || || | ||||||||||||||||||||    
T  7131640 caacaattcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctcca 7131709  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 6589408 - 6589348
Alignment:
Q  147 tttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||||||| ||| | ||||| ||||| ||  ||||| ||||||||||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctcca 6589348  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 228
Target Start/End: Original strand, 12102321 - 12102361
Alignment:
Q  188 tgacaagttcaacacctccaatttggaaacttgaaagttca 228  Q
    |||||||||||||||||||| ||||| ||||| ||||||||    
T  12102321 tgacaagttcaacacctccagtttgggaacttcaaagttca 12102361  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 148 - 230
Target Start/End: Complemental strand, 32785856 - 32785774
Alignment:
Q  148 ttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 230  Q
    ||||||||||||| | || ||||||||||||| |||| | |||||||||||||||||| | ||||| | ||| ||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcatt 32785774  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 140 - 198
Target Start/End: Complemental strand, 44575587 - 44575529
Alignment:
Q  140 acaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttca 198  Q
    ||||||||||||||||||||||||||| |||||||||| | |||| |||||||| ||||    
T  44575587 acaactctttgagatcacatacaatgtgtcatcatcaactcttgtttttgacaaattca 44575529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 226
Target Start/End: Complemental strand, 45245183 - 45245091
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagtt 226  Q
    ||||| ||||||||||||||||||||  | ||||||||||||||   |||||| |||||| ||||||||||| | ||| | ||||| ||||||    
T  45245183 cccacgacaactctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtt 45245091  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 252 - 318
Target Start/End: Complemental strand, 43277440 - 43277371
Alignment:
Q  252 caagatctcaagttcaaatgagtaattttacaacat---cttaaaacttcaacaataccttcggatatgc 318  Q
    |||||| ||||||||||||| |||||||||||||||   ||||||||||| ||||||| ||| |||||||    
T  43277440 caagatgtcaagttcaaatgcgtaattttacaacatctccttaaaacttcgacaatacattcagatatgc 43277371  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 243
Target Start/End: Complemental strand, 1037762 - 1037653
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcattgaa 233  Q
    |||||||||| |||||||||||| ||| | ||||||||||||||    ||| | ||||||||| |||||||| ||||  | ||||| |||||| |||  |    
T  1037762 cccacaacaattctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattcta 1037663  T
Q  234 agtagattca 243  Q
    ||||| ||||    
T  1037662 agtagtttca 1037653  T

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Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 39185 - 39256
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctc 205  Q
    ||||| ||||||||||||||||||||| | ||||||||||| ||  |||||   || |||||||||||||||    
T  39185 cccactacaactctttgagatcacataaagtgtttcatcattaacctttgtaaatgtcaagttcaacacctc 39256  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 15092249 - 15092176
Alignment:
Q  134 cccacaacaactctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctcca 207  Q
    |||||||||| ||||||||||| |||| | ||||| ||||| ||  ||||| | |||||| |||||||||||||    
T  15092249 cccacaacaattctttgagatcgcatagagtgttttatcattaacctttgtttctgacaaattcaacacctcca 15092176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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